Wall clock time and date at job start Sun Mar 29 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99971 * 2 1 4 4 C 1.50703 * 109.47134 * 293.95492 * 3 2 1 5 5 H 1.08003 * 120.00020 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00303 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99440 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00236 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46917 * 60.00403 * 8 6 4 10 10 H 1.48497 * 109.47104 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46919 * 300.00143 * 8 6 4 12 12 C 1.46897 * 111.00448 * 123.95359 * 2 1 3 13 13 C 1.50706 * 109.46900 * 66.04231 * 12 2 1 14 14 N 1.32140 * 119.91398 * 269.72931 * 13 12 2 15 15 C 1.33114 * 120.08663 * 179.76867 * 14 13 12 16 16 N 1.37996 * 120.04583 * 180.27378 * 15 14 13 17 17 N 1.32850 * 119.91190 * 0.50865 * 15 14 13 18 18 C 1.32852 * 119.82428 * 359.74341 * 17 15 14 19 19 N 1.37995 * 120.04625 * 180.02562 * 18 17 15 20 20 N 1.32152 * 119.90849 * 90.00229 * 13 12 2 21 21 H 1.09004 * 109.47172 * 296.04346 * 1 2 3 22 22 H 1.09000 * 109.47430 * 56.04692 * 1 2 3 23 23 H 1.09004 * 109.47117 * 176.04633 * 1 2 3 24 24 H 1.08993 * 109.47450 * 53.95631 * 3 2 1 25 25 H 1.09003 * 109.47053 * 173.96072 * 3 2 1 26 26 H 0.97000 * 119.99247 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46743 * 306.05183 * 12 2 1 28 28 H 1.09000 * 109.47313 * 186.04366 * 12 2 1 29 29 H 0.96994 * 120.00254 * 180.23455 * 16 15 14 30 30 H 0.97008 * 120.00106 * 0.22673 * 16 15 14 31 31 H 0.96995 * 120.00447 * 179.97438 * 19 18 17 32 32 H 0.97007 * 119.99973 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5113 -2.0488 6 6 2.0266 3.3495 -1.5285 7 7 2.7118 4.0019 -0.6150 8 14 1.5828 4.1868 -3.1383 9 1 0.1057 4.2230 -3.2866 10 1 2.1149 5.5732 -3.1383 11 1 2.1756 3.4297 -4.2699 12 6 1.9955 -0.7659 1.1375 13 6 1.6369 -2.2204 0.9728 14 7 0.5055 -2.6813 1.4764 15 6 0.1832 -3.9644 1.3290 16 7 -1.0012 -4.4436 1.8503 17 7 1.0055 -4.7840 0.6833 18 6 2.1444 -4.3180 0.1827 19 7 3.0017 -5.1652 -0.4893 20 7 2.4574 -3.0326 0.3298 21 1 -0.3634 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3444 0.1081 26 1 2.9857 4.9183 -0.7767 27 1 1.5611 -0.3872 2.0627 28 1 3.0798 -0.6611 1.1755 29 1 -1.2339 -5.3794 1.7454 30 1 -1.6012 -3.8446 2.3218 31 1 3.8329 -4.8243 -0.8548 32 1 2.7730 -6.1019 -0.5961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133279352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:06 Heat of formation + Delta-G solvation = 80.439026 kcal Electronic energy + Delta-G solvation = -16563.987858 eV Core-core repulsion = 13788.318584 eV Total energy + Delta-G solvation = -2775.669274 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24209 -36.82366 -36.17959 -34.64474 -32.51475 -31.87346 -31.11813 -28.17918 -26.87969 -24.51100 -23.46071 -22.23256 -20.30143 -19.25948 -17.91558 -16.47546 -16.14313 -16.03914 -15.69779 -15.17161 -14.74244 -14.11204 -13.90389 -13.77760 -13.65714 -12.44127 -12.24614 -11.86474 -11.46110 -11.29706 -10.85764 -10.81667 -10.59956 -10.40587 -9.87020 -9.34460 -9.27804 -9.14814 -9.10418 -8.63801 -8.39332 -7.24979 -5.98857 -3.99619 1.38182 1.61518 2.85498 3.37267 3.38420 3.40778 3.44300 4.04494 4.23502 4.48185 4.79453 5.13775 5.26225 5.37896 5.92809 6.00345 6.27211 6.33893 6.45282 6.61300 6.64746 6.84196 6.98436 7.25483 7.29012 7.35794 7.54287 7.79324 7.81839 8.09173 8.20642 8.55025 8.82129 9.06928 9.63877 11.12096 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.005285 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.073952 B = 5296.762397 C = 5542.154637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.530 5.530 3 C 0.195 3.805 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.118 3.882 13 C 0.455 3.545 14 N -0.632 5.632 15 C 0.625 3.375 16 N -0.812 5.812 17 N -0.665 5.665 18 C 0.625 3.375 19 N -0.810 5.810 20 N -0.617 5.617 21 H 0.017 0.983 22 H 0.072 0.928 23 H 0.044 0.956 24 H -0.005 1.005 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.412 0.588 30 H 0.416 0.584 31 H 0.418 0.582 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -17.134 4.280 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.070 3.930 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.013 4.013 13 C 0.177 3.823 14 N -0.367 5.367 15 C 0.257 3.743 16 N -0.362 5.362 17 N -0.406 5.406 18 C 0.257 3.743 19 N -0.360 5.360 20 N -0.351 5.351 21 H 0.035 0.965 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.013 0.987 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.243 0.757 30 H 0.248 0.752 31 H 0.250 0.750 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.258 -17.159 3.889 17.893 hybrid contribution -0.625 0.369 -0.199 0.752 sum -3.883 -16.790 3.690 17.624 Atomic orbital electron populations 1.22229 0.88312 0.99728 1.00571 1.62098 1.07479 1.17954 1.38043 1.19770 0.95627 0.80639 0.96918 1.21094 1.34889 0.96853 1.01607 0.91949 1.24965 0.95306 0.97278 0.96974 1.69950 1.38338 1.11475 1.34074 0.86547 0.78653 0.78287 0.83835 1.20330 1.21362 1.20192 1.20859 1.01564 0.84121 0.94718 1.23145 0.82055 0.96269 0.80849 1.68518 1.22607 1.13571 1.31974 1.19034 0.86210 0.84954 0.84108 1.41619 1.18792 1.14072 1.61701 1.67813 1.07853 1.39901 1.25068 1.19079 0.84720 0.85982 0.84470 1.41635 1.23027 1.11037 1.60301 1.68504 1.37368 1.02756 1.26439 0.96479 0.90886 0.93731 0.98687 0.94794 0.92878 0.92595 0.88338 0.75683 0.75193 0.75016 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 9.11 60.06 0.55 1.40 16 2 N -0.53 -12.08 4.74 -245.82 -1.17 -13.25 16 3 C 0.20 5.14 4.72 -4.97 -0.02 5.12 16 4 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 5 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.12 2.30 5.45 -4.97 -0.03 2.27 16 13 C 0.45 8.50 6.44 -156.59 -1.01 7.49 16 14 N -0.63 -10.90 9.43 -11.52 -0.11 -11.01 16 15 C 0.62 9.43 8.76 -322.14 -2.82 6.61 16 16 N -0.81 -8.21 9.05 29.85 0.27 -7.94 16 17 N -0.66 -10.09 10.57 -14.75 -0.16 -10.24 16 18 C 0.63 9.72 8.76 -322.14 -2.82 6.90 16 19 N -0.81 -8.66 9.05 29.85 0.27 -8.39 16 20 N -0.62 -11.15 10.46 -11.52 -0.12 -11.27 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 22 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 23 H 0.04 0.89 6.58 -51.93 -0.34 0.55 16 24 H 0.00 -0.13 8.12 -51.93 -0.42 -0.55 16 25 H 0.03 0.94 7.93 -51.93 -0.41 0.53 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 28 H 0.10 1.88 7.93 -51.93 -0.41 1.47 16 29 H 0.41 3.15 8.95 -40.82 -0.37 2.79 16 30 H 0.42 3.51 8.95 -40.82 -0.37 3.15 16 31 H 0.42 3.85 8.95 -40.82 -0.37 3.49 16 32 H 0.41 3.31 8.95 -40.82 -0.37 2.94 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -33.44 279.42 -11.38 -44.82 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.75 Total: 5.62 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: -6.54 Total: 16.61 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -0.27 Total: -88.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.44 -11.38 -44.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133279352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.264 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds