Wall clock time and date at job start Sun Mar 29 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99971 * 2 1 4 4 C 1.50703 * 109.47134 * 293.95492 * 3 2 1 5 5 H 1.08003 * 120.00020 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00303 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99440 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00236 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46917 * 60.00403 * 8 6 4 10 10 H 1.48497 * 109.47104 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46919 * 300.00143 * 8 6 4 12 12 C 1.46897 * 111.00448 * 123.95359 * 2 1 3 13 13 C 1.50706 * 109.46900 * 66.04231 * 12 2 1 14 14 N 1.32140 * 119.91398 * 269.72931 * 13 12 2 15 15 C 1.33114 * 120.08663 * 179.76867 * 14 13 12 16 16 N 1.37996 * 120.04583 * 180.27378 * 15 14 13 17 17 N 1.32850 * 119.91190 * 0.50865 * 15 14 13 18 18 C 1.32852 * 119.82428 * 359.74341 * 17 15 14 19 19 N 1.37995 * 120.04625 * 180.02562 * 18 17 15 20 20 N 1.32152 * 119.90849 * 90.00229 * 13 12 2 21 21 H 1.09004 * 109.47172 * 296.04346 * 1 2 3 22 22 H 1.09000 * 109.47430 * 56.04692 * 1 2 3 23 23 H 1.09004 * 109.47117 * 176.04633 * 1 2 3 24 24 H 1.08993 * 109.47450 * 53.95631 * 3 2 1 25 25 H 1.09003 * 109.47053 * 173.96072 * 3 2 1 26 26 H 0.97000 * 119.99247 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46743 * 306.05183 * 12 2 1 28 28 H 1.09000 * 109.47313 * 186.04366 * 12 2 1 29 29 H 0.96994 * 120.00254 * 180.23455 * 16 15 14 30 30 H 0.97008 * 120.00106 * 0.22673 * 16 15 14 31 31 H 0.96995 * 120.00447 * 179.97438 * 19 18 17 32 32 H 0.97007 * 119.99973 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5113 -2.0488 6 6 2.0266 3.3495 -1.5285 7 7 2.7118 4.0019 -0.6150 8 14 1.5828 4.1868 -3.1383 9 1 0.1057 4.2230 -3.2866 10 1 2.1149 5.5732 -3.1383 11 1 2.1756 3.4297 -4.2699 12 6 1.9955 -0.7659 1.1375 13 6 1.6369 -2.2204 0.9728 14 7 0.5055 -2.6813 1.4764 15 6 0.1832 -3.9644 1.3290 16 7 -1.0012 -4.4436 1.8503 17 7 1.0055 -4.7840 0.6833 18 6 2.1444 -4.3180 0.1827 19 7 3.0017 -5.1652 -0.4893 20 7 2.4574 -3.0326 0.3298 21 1 -0.3634 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3444 0.1081 26 1 2.9857 4.9183 -0.7767 27 1 1.5611 -0.3872 2.0627 28 1 3.0798 -0.6611 1.1755 29 1 -1.2339 -5.3794 1.7454 30 1 -1.6012 -3.8446 2.3218 31 1 3.8329 -4.8243 -0.8548 32 1 2.7730 -6.1019 -0.5961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133279352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:05 Heat of formation + Delta-G solvation = 56.567681 kcal Electronic energy + Delta-G solvation = -16565.022997 eV Core-core repulsion = 13788.318584 eV Total energy + Delta-G solvation = -2776.704413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.124 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.45031 -38.50963 -37.23620 -35.97657 -34.54222 -33.01713 -32.28084 -29.94991 -28.72342 -26.33688 -24.58456 -23.84102 -22.07533 -20.41863 -19.06849 -18.40716 -17.29402 -17.13105 -17.08582 -16.58760 -16.15927 -15.79326 -15.60159 -15.43823 -15.02217 -14.07740 -13.69785 -13.50821 -13.36723 -12.98596 -12.65979 -12.60631 -12.32268 -12.12048 -11.89613 -11.34403 -10.57770 -10.56011 -10.48563 -10.08572 -9.73611 -9.08854 -8.16964 -6.26352 0.07983 0.44030 1.44061 1.47245 1.55094 1.84341 2.34051 2.43059 2.73512 2.96180 3.15955 3.51757 3.73123 3.97071 4.39002 4.48433 4.61786 4.74248 5.03343 5.11209 5.19984 5.28428 5.53427 5.56080 5.66107 6.04047 6.09481 6.22197 6.26129 6.50960 6.55145 6.87128 6.92321 7.42294 7.65673 8.93993 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.005285 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.073952 B = 5296.762397 C = 5542.154637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.540 5.540 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.271 1.271 12 C 0.122 3.878 13 C 0.443 3.557 14 N -0.644 5.644 15 C 0.612 3.388 16 N -0.785 5.785 17 N -0.663 5.663 18 C 0.612 3.388 19 N -0.786 5.786 20 N -0.641 5.641 21 H 0.021 0.979 22 H 0.058 0.942 23 H 0.057 0.943 24 H -0.026 1.026 25 H 0.013 0.987 26 H 0.265 0.735 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.426 0.574 30 H 0.426 0.574 31 H 0.426 0.574 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.383 -18.427 3.583 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.265 5.265 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.196 1.196 12 C -0.008 4.008 13 C 0.164 3.836 14 N -0.380 5.380 15 C 0.244 3.756 16 N -0.337 5.337 17 N -0.405 5.405 18 C 0.244 3.756 19 N -0.337 5.337 20 N -0.376 5.376 21 H 0.039 0.961 22 H 0.077 0.923 23 H 0.076 0.924 24 H -0.009 1.009 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.260 0.740 30 H 0.260 0.740 31 H 0.259 0.741 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.142 -18.542 3.195 19.266 hybrid contribution -0.367 0.634 0.072 0.737 sum -4.509 -17.907 3.267 18.753 Atomic orbital electron populations 1.22104 0.87293 1.00201 1.00051 1.61952 1.08424 1.15992 1.40120 1.19422 0.94193 0.82401 0.95506 1.21374 1.35145 0.97511 1.02277 0.92272 1.25845 0.94959 0.97880 1.00588 1.70069 1.39117 1.11903 1.36073 0.85454 0.78765 0.77219 0.79265 1.19337 1.20646 1.19588 1.20758 1.01344 0.84938 0.93744 1.22746 0.83069 0.95753 0.82045 1.68460 1.22217 1.14829 1.32540 1.19422 0.87371 0.84525 0.84261 1.41602 1.17031 1.15025 1.60017 1.67958 1.07814 1.39380 1.25389 1.19441 0.85485 0.85818 0.84826 1.41623 1.22375 1.11242 1.58451 1.68437 1.37860 1.04008 1.27330 0.96094 0.92339 0.92447 1.00873 0.96904 0.92604 0.91988 0.88614 0.73993 0.74030 0.74068 0.73965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.19 9.11 127.69 1.16 3.36 16 2 N -0.54 -24.92 4.74 -931.65 -4.42 -29.34 16 3 C 0.21 11.41 4.72 85.56 0.40 11.81 16 4 C -0.52 -30.24 8.46 25.60 0.22 -30.02 16 5 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 8 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.12 4.84 5.45 85.56 0.47 5.30 16 13 C 0.44 16.38 6.44 138.54 0.89 17.27 16 14 N -0.64 -21.54 9.43 -190.35 -1.80 -23.33 16 15 C 0.61 17.38 8.76 261.25 2.29 19.67 16 16 N -0.79 -13.95 9.05 -59.46 -0.54 -14.48 16 17 N -0.66 -18.85 10.57 -200.59 -2.12 -20.97 16 18 C 0.61 18.13 8.76 261.25 2.29 20.42 16 19 N -0.79 -15.24 9.05 -59.46 -0.54 -15.78 16 20 N -0.64 -22.77 10.46 -190.36 -1.99 -24.76 16 21 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 22 H 0.06 2.61 6.76 -2.39 -0.02 2.59 16 23 H 0.06 2.26 6.58 -2.39 -0.02 2.25 16 24 H -0.03 -1.52 8.12 -2.39 -0.02 -1.54 16 25 H 0.01 0.74 7.93 -2.39 -0.02 0.72 16 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 28 H 0.10 3.76 7.93 -2.39 -0.02 3.75 16 29 H 0.43 5.29 8.95 -92.71 -0.83 4.46 16 30 H 0.43 6.13 8.95 -92.70 -0.83 5.30 16 31 H 0.43 7.08 8.95 -92.71 -0.83 6.25 16 32 H 0.43 5.80 8.95 -92.70 -0.83 4.97 16 Total: -1.00 -71.11 279.42 -3.03 -74.14 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -2.12 Total: 14.95 kcal Atomic # 6 Polarization: 40.41 SS G_CDS: 8.18 Total: 48.59 kcal Atomic # 7 Polarization: -173.25 SS G_CDS: -11.12 Total: -184.36 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -71.11 -3.03 -74.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133279352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.705 kcal (2) G-P(sol) polarization free energy of solvation -71.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds