Wall clock time and date at job start Sun Mar 29 2020 23:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47085 * 270.27634 * 3 2 1 5 5 H 1.48497 * 109.46789 * 30.27643 * 3 2 1 6 6 H 1.48490 * 109.47245 * 150.27793 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47048 * 179.97438 * 12 10 9 14 14 C 1.48531 * 110.99764 * 170.00032 * 13 12 10 15 15 C 1.54324 * 104.67020 * 200.80802 * 14 13 12 16 16 H 1.09000 * 111.81977 * 262.42322 * 15 14 13 17 17 C 1.54164 * 108.86495 * 138.40741 * 15 14 13 18 18 C 1.54842 * 104.32669 * 223.67763 * 17 15 14 19 19 C 1.54844 * 102.73317 * 38.17857 * 18 17 15 20 20 C 1.54900 * 104.93196 * 23.92643 * 15 14 13 21 21 H 1.08999 * 111.88799 * 237.65959 * 20 15 14 22 22 C 1.48534 * 111.00084 * 54.59451 * 13 12 10 23 23 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 24 24 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 26 26 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 27 27 H 1.09007 * 110.39930 * 319.60282 * 14 13 12 28 28 H 1.09002 * 110.40106 * 81.89564 * 14 13 12 29 29 H 1.09002 * 110.45880 * 342.38449 * 17 15 14 30 30 H 1.08994 * 110.46524 * 104.96138 * 17 15 14 31 31 H 1.09000 * 110.76484 * 156.49322 * 18 17 15 32 32 H 1.08998 * 110.75496 * 279.87164 * 18 17 15 33 33 H 1.09001 * 110.46163 * 80.53540 * 19 18 17 34 34 H 1.09006 * 110.45898 * 202.98076 * 19 18 17 35 35 H 1.08996 * 110.39645 * 277.99147 * 22 13 12 36 36 H 1.08997 * 110.39588 * 40.39392 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4898 2.0498 -1.4001 5 1 1.4484 2.6509 0.7059 6 1 3.5485 1.4385 0.6941 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 7 2.1984 -5.9795 -0.0183 14 6 1.5072 -7.2721 0.2218 15 6 2.6180 -8.2237 0.7138 16 1 3.0047 -8.8465 -0.0929 17 6 2.0684 -9.0715 1.8782 18 6 3.2074 -9.0658 2.9272 19 6 3.7565 -7.6215 2.8268 20 6 3.7096 -7.2939 1.2998 21 1 4.6729 -7.4398 0.8110 22 6 3.1593 -5.8650 1.1086 23 1 -0.4850 0.8400 0.0040 24 1 0.3533 -2.3906 -0.0021 25 1 0.6202 -4.9229 0.8804 26 1 0.6140 -4.9186 -0.8996 27 1 0.7398 -7.1562 0.9871 28 1 1.0671 -7.6451 -0.7031 29 1 1.1685 -8.6150 2.2903 30 1 1.8624 -10.0886 1.5449 31 1 2.8146 -9.2613 3.9250 32 1 3.9776 -9.7910 2.6651 33 1 3.1257 -6.9339 3.3901 34 1 4.7838 -7.5784 3.1890 35 1 3.9659 -5.1784 0.8517 36 1 2.6480 -5.5309 2.0114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152993838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:56 Heat of formation + Delta-G solvation = -38.552818 kcal Electronic energy + Delta-G solvation = -17182.879430 eV Core-core repulsion = 14473.297875 eV Total energy + Delta-G solvation = -2709.581555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82396 -37.98687 -35.05092 -33.79095 -31.27176 -30.25232 -29.78673 -26.23551 -25.39524 -24.10281 -21.17195 -20.62988 -19.27457 -18.85126 -17.78033 -16.40074 -15.75189 -15.24121 -14.63307 -14.54343 -14.14503 -13.92386 -13.73783 -13.26506 -12.47184 -12.37502 -11.97153 -11.76878 -11.53101 -11.25496 -11.08922 -11.01123 -10.83709 -10.61451 -10.57153 -10.41055 -10.37063 -10.28098 -10.20343 -9.46669 -8.35801 -7.98458 -7.84640 -6.40622 -3.81359 3.18740 3.27236 3.33093 3.91879 4.11714 4.31207 4.47777 4.65919 4.78488 5.09246 5.26352 5.28065 5.33076 5.45314 5.52797 5.55323 5.62922 5.66925 5.79998 5.85956 5.88769 5.98948 6.04195 6.05738 6.16197 6.24417 6.30611 6.38173 6.51306 6.77579 7.29305 7.37839 7.56372 8.07591 8.63290 9.19226 9.55456 10.07482 10.77210 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051806 B = 0.004960 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.351556 B = 5643.815554 C = 5866.426246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.034 3.966 13 N -0.491 5.491 14 C 0.033 3.967 15 C -0.093 4.093 16 H 0.081 0.919 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.095 4.095 21 H 0.084 0.916 22 C 0.042 3.958 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -15.171 4.103 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.465 6.465 12 C -0.098 4.098 13 N -0.214 5.214 14 C -0.095 4.095 15 C -0.112 4.112 16 H 0.100 0.900 17 C -0.157 4.157 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.114 4.114 21 H 0.103 0.897 22 C -0.086 4.086 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.048 -14.955 3.570 15.511 hybrid contribution -0.858 0.923 0.723 1.453 sum 1.190 -14.032 4.293 14.722 Atomic orbital electron populations 1.69612 1.05958 1.28147 1.50643 1.25261 0.95621 0.99715 0.97329 0.85855 0.79214 0.80807 0.78401 1.20380 1.20951 1.19428 1.19706 0.93364 0.82215 1.47547 0.87905 1.41861 1.09192 1.04580 1.64330 1.19739 0.88366 0.84669 0.84373 1.90446 1.13733 1.86811 1.55477 1.22079 0.94727 0.91493 1.01474 1.65224 1.13465 1.00145 1.42604 1.23341 0.95496 0.90822 0.99842 1.22492 0.95402 0.96008 0.97342 0.90008 1.22493 0.98141 0.99538 0.95507 1.22489 0.97885 0.97125 0.98652 1.22854 1.00909 0.96260 0.95823 1.22954 0.98596 0.95122 0.94713 0.89728 1.23408 0.97684 0.95988 0.91493 0.91880 0.77468 0.93488 0.89288 0.94072 0.90694 0.91606 0.91903 0.91898 0.91651 0.91517 0.91873 0.87048 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 10.72 7.50 -10.98 -0.08 10.64 16 11 O -0.58 -15.74 13.24 5.55 0.07 -15.67 16 12 C 0.03 0.65 5.55 -4.98 -0.03 0.62 16 13 N -0.49 -8.79 5.33 -231.54 -1.23 -10.02 16 14 C 0.03 0.46 6.02 -2.23 -0.01 0.45 16 15 C -0.09 -1.15 3.87 -88.32 -0.34 -1.49 16 16 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.12 -1.22 6.36 -25.15 -0.16 -1.38 16 18 C -0.12 -1.22 6.90 -24.79 -0.17 -1.39 16 19 C -0.12 -1.42 6.41 -24.02 -0.15 -1.57 16 20 C -0.09 -1.31 4.04 -87.19 -0.35 -1.66 16 21 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 22 C 0.04 0.74 4.87 -2.23 -0.01 0.73 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 24 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 25 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.04 0.55 6.87 -51.92 -0.36 0.19 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.69 7.18 -51.93 -0.37 0.32 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.83 7.25 -51.93 -0.38 0.46 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 2.35 6.04 -51.93 -0.31 2.04 16 36 H 0.04 0.64 7.08 -51.93 -0.37 0.27 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -30.25 285.31 -8.19 -38.44 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.41 Total: 8.56 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.55 Total: -3.13 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.57 Total: -48.69 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.07 Total: -15.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.25 -8.19 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152993838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.112 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds