Wall clock time and date at job start Sun Mar 29 2020 23:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47085 * 270.27634 * 3 2 1 5 5 H 1.48497 * 109.46789 * 30.27643 * 3 2 1 6 6 H 1.48490 * 109.47245 * 150.27793 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47048 * 179.97438 * 12 10 9 14 14 C 1.48531 * 110.99764 * 170.00032 * 13 12 10 15 15 C 1.54324 * 104.67020 * 200.80802 * 14 13 12 16 16 H 1.09000 * 111.81977 * 262.42322 * 15 14 13 17 17 C 1.54164 * 108.86495 * 138.40741 * 15 14 13 18 18 C 1.54842 * 104.32669 * 223.67763 * 17 15 14 19 19 C 1.54844 * 102.73317 * 38.17857 * 18 17 15 20 20 C 1.54900 * 104.93196 * 23.92643 * 15 14 13 21 21 H 1.08999 * 111.88799 * 237.65959 * 20 15 14 22 22 C 1.48534 * 111.00084 * 54.59451 * 13 12 10 23 23 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 24 24 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 26 26 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 27 27 H 1.09007 * 110.39930 * 319.60282 * 14 13 12 28 28 H 1.09002 * 110.40106 * 81.89564 * 14 13 12 29 29 H 1.09002 * 110.45880 * 342.38449 * 17 15 14 30 30 H 1.08994 * 110.46524 * 104.96138 * 17 15 14 31 31 H 1.09000 * 110.76484 * 156.49322 * 18 17 15 32 32 H 1.08998 * 110.75496 * 279.87164 * 18 17 15 33 33 H 1.09001 * 110.46163 * 80.53540 * 19 18 17 34 34 H 1.09006 * 110.45898 * 202.98076 * 19 18 17 35 35 H 1.08996 * 110.39645 * 277.99147 * 22 13 12 36 36 H 1.08997 * 110.39588 * 40.39392 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4898 2.0498 -1.4001 5 1 1.4484 2.6509 0.7059 6 1 3.5485 1.4385 0.6941 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 7 2.1984 -5.9795 -0.0183 14 6 1.5072 -7.2721 0.2218 15 6 2.6180 -8.2237 0.7138 16 1 3.0047 -8.8465 -0.0929 17 6 2.0684 -9.0715 1.8782 18 6 3.2074 -9.0658 2.9272 19 6 3.7565 -7.6215 2.8268 20 6 3.7096 -7.2939 1.2998 21 1 4.6729 -7.4398 0.8110 22 6 3.1593 -5.8650 1.1086 23 1 -0.4850 0.8400 0.0040 24 1 0.3533 -2.3906 -0.0021 25 1 0.6202 -4.9229 0.8804 26 1 0.6140 -4.9186 -0.8996 27 1 0.7398 -7.1562 0.9871 28 1 1.0671 -7.6451 -0.7031 29 1 1.1685 -8.6150 2.2903 30 1 1.8624 -10.0886 1.5449 31 1 2.8146 -9.2613 3.9250 32 1 3.9776 -9.7910 2.6651 33 1 3.1257 -6.9339 3.3901 34 1 4.7838 -7.5784 3.1890 35 1 3.9659 -5.1784 0.8517 36 1 2.6480 -5.5309 2.0114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152993838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:55 Heat of formation + Delta-G solvation = -59.763653 kcal Electronic energy + Delta-G solvation = -17183.799201 eV Core-core repulsion = 14473.297875 eV Total energy + Delta-G solvation = -2710.501326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11094 -39.74052 -36.44903 -35.69945 -33.33135 -31.31765 -31.07185 -27.86543 -26.48148 -25.87560 -22.44223 -21.67729 -20.92764 -20.14154 -19.76422 -17.74071 -17.33460 -16.67000 -16.39512 -16.05097 -15.59276 -15.34583 -15.12044 -14.70815 -13.98193 -13.74496 -13.52945 -13.21943 -13.00054 -12.95842 -12.50732 -12.44173 -12.14475 -11.92895 -11.82235 -11.64206 -11.56161 -11.48619 -11.42424 -11.36134 -10.22167 -10.03271 -9.33874 -8.48610 -5.97657 1.36665 1.40455 1.53473 2.00958 2.27501 2.87310 3.17823 3.28571 3.61158 3.61832 3.82407 4.23369 4.24411 4.35120 4.41683 4.47091 4.49563 4.55760 4.59376 4.60303 4.81707 4.85124 4.98951 5.00729 5.15060 5.19191 5.27386 5.34868 5.39963 5.47964 5.52396 5.86584 5.94644 6.11019 6.58214 7.10370 7.52329 8.08406 8.68998 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051806 B = 0.004960 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.351556 B = 5643.815554 C = 5866.426246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.615 6.615 12 C 0.046 3.954 13 N -0.511 5.511 14 C 0.033 3.967 15 C -0.089 4.089 16 H 0.092 0.908 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.094 4.094 21 H 0.082 0.918 22 C 0.045 3.955 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 -16.614 4.439 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.501 6.501 12 C -0.086 4.086 13 N -0.236 5.236 14 C -0.094 4.094 15 C -0.108 4.108 16 H 0.110 0.890 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.113 4.113 21 H 0.100 0.900 22 C -0.083 4.083 23 H 0.088 0.912 24 H 0.230 0.770 25 H 0.083 0.917 26 H 0.127 0.873 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.324 -16.420 3.905 16.930 hybrid contribution -0.624 1.354 0.602 1.608 sum 0.699 -15.065 4.508 15.741 Atomic orbital electron populations 1.69672 1.06887 1.29370 1.50235 1.26056 0.96543 1.02433 0.96147 0.84910 0.77865 0.76762 0.78692 1.19592 1.19401 1.19772 1.19670 0.92692 0.83955 1.50058 0.90324 1.41929 1.09291 1.04691 1.65036 1.20723 0.88309 0.85999 0.82423 1.90442 1.15586 1.87642 1.56422 1.21970 0.94458 0.88978 1.03187 1.65207 1.14003 1.01352 1.42989 1.23474 0.96047 0.88859 1.01038 1.22528 0.94138 0.95680 0.98445 0.88950 1.22476 0.97989 1.00181 0.94483 1.22480 0.98010 0.95548 0.99404 1.22836 1.01323 0.97695 0.93935 1.22934 0.98911 0.92887 0.96617 0.89981 1.23219 0.96503 0.97720 0.90862 0.91232 0.77036 0.91694 0.87310 0.93153 0.89203 0.91722 0.89732 0.90541 0.90383 0.92667 0.91290 0.91446 0.95763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -30.36 5.29 -306.97 -1.62 -31.99 16 10 C 0.44 21.82 7.50 87.66 0.66 22.47 16 11 O -0.61 -34.94 13.24 -3.07 -0.04 -34.98 16 12 C 0.05 1.71 5.55 85.56 0.47 2.19 16 13 N -0.51 -18.11 5.33 -886.44 -4.73 -22.84 16 14 C 0.03 0.85 6.02 86.44 0.52 1.37 16 15 C -0.09 -1.98 3.87 -9.30 -0.04 -2.01 16 16 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 17 C -0.11 -1.93 6.36 31.62 0.20 -1.73 16 18 C -0.12 -1.94 6.90 31.85 0.22 -1.72 16 19 C -0.12 -2.67 6.41 32.35 0.21 -2.46 16 20 C -0.09 -2.54 4.04 -8.57 -0.03 -2.58 16 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 22 C 0.04 1.62 4.87 86.43 0.42 2.05 16 23 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 24 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 25 H 0.07 2.21 7.88 -2.38 -0.02 2.19 16 26 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 27 H 0.05 1.22 6.87 -2.38 -0.02 1.20 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.14 7.18 -2.39 -0.02 1.12 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.35 7.25 -2.39 -0.02 1.33 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.07 3.03 6.04 -2.39 -0.01 3.02 16 36 H 0.02 0.91 7.08 -2.39 -0.02 0.89 16 Total: -1.00 -66.56 285.31 0.17 -66.38 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.34 Total: 29.22 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 3.91 Total: -1.19 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -6.07 Total: -104.96 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.04 Total: -34.98 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.56 0.17 -66.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152993838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.620 kcal (2) G-P(sol) polarization free energy of solvation -66.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds