Wall clock time and date at job start Sun Mar 29 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 115.55077 * 2 1 4 4 C 1.53007 * 117.49859 * 214.33218 * 2 1 3 5 5 C 1.53004 * 117.49783 * 145.67655 * 2 1 3 6 6 H 1.09002 * 117.49355 * 214.97569 * 5 2 1 7 7 C 1.50700 * 117.50097 * 359.97164 * 5 2 1 8 8 O 1.20827 * 119.99468 * 0.02562 * 7 5 2 9 9 O 1.34228 * 119.99937 * 180.02562 * 7 5 2 10 10 C 1.45199 * 116.99633 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.50704 * 115.54824 * 39.89452 * 11 10 9 13 13 H 1.07997 * 120.00569 * 264.97103 * 12 11 10 14 14 C 1.37884 * 119.99225 * 84.97580 * 12 11 10 15 15 N 1.31514 * 120.00352 * 358.42383 * 14 12 11 16 16 Si 1.86805 * 119.99482 * 178.42961 * 14 12 11 17 17 H 1.48493 * 109.47291 * 89.99626 * 16 14 12 18 18 H 1.48503 * 109.46610 * 209.99894 * 16 14 12 19 19 H 1.48502 * 109.46982 * 329.99667 * 16 14 12 20 20 C 1.53006 * 117.50168 * 254.19555 * 11 10 9 21 21 C 1.53001 * 117.50109 * 185.56926 * 11 10 9 22 22 H 1.09003 * 109.47273 * 34.41515 * 1 2 3 23 23 H 1.09002 * 109.47446 * 154.41402 * 1 2 3 24 24 H 1.09004 * 109.47049 * 274.41128 * 1 2 3 25 25 H 1.09009 * 109.46955 * 85.58875 * 3 2 1 26 26 H 1.09006 * 109.47173 * 205.58099 * 3 2 1 27 27 H 1.08995 * 109.47543 * 325.58658 * 3 2 1 28 28 H 1.09000 * 117.49603 * 0.02562 * 4 2 1 29 29 H 1.08994 * 117.49836 * 145.01673 * 4 2 1 30 30 H 1.08994 * 109.47719 * 300.00465 * 10 9 7 31 31 H 1.09005 * 109.46967 * 60.01024 * 10 9 7 32 32 H 0.96993 * 119.99479 * 180.02562 * 15 14 12 33 33 H 1.08999 * 117.49820 * 359.97438 * 20 11 10 34 34 H 1.08994 * 117.50145 * 145.01930 * 20 11 10 35 35 H 1.08999 * 117.49631 * 214.97908 * 21 11 10 36 36 H 1.08993 * 117.49697 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 2.2364 -1.1208 -0.7655 5 6 2.2364 -1.1209 0.7653 6 1 3.1715 -0.8748 1.2684 7 6 1.3720 -2.1400 1.4619 8 8 0.1683 -2.0529 1.4024 9 8 1.9393 -3.1443 2.1483 10 6 1.0452 -4.0886 2.7944 11 6 1.8679 -5.1533 3.5227 12 6 3.0970 -4.6504 4.2351 13 1 4.0581 -4.6849 3.7437 14 6 2.9944 -4.1462 5.5143 15 7 1.8195 -4.0754 6.1010 16 14 4.5243 -3.5633 6.4139 17 1 4.7465 -2.1227 6.1306 18 1 4.3438 -3.7585 7.8749 19 1 5.6987 -4.3457 5.9513 20 6 1.9359 -6.5464 2.8935 21 6 1.1088 -6.3187 4.1605 22 1 -0.3634 0.8478 -0.5808 23 1 -0.3634 -0.9269 -0.4438 24 1 -0.3633 0.0790 1.0247 25 1 2.2752 1.7422 1.0247 26 1 3.1829 1.3083 -0.4438 27 1 1.5817 2.0738 -0.5807 28 1 1.6112 -1.8578 -1.2694 29 1 3.1714 -0.8747 -1.2687 30 1 0.4170 -3.5613 3.5123 31 1 0.4163 -4.5660 2.0429 32 1 1.7474 -3.7204 7.0008 33 1 1.3943 -6.7044 1.9609 34 1 2.8698 -7.0992 2.9947 35 1 1.4987 -6.7218 5.0952 36 1 0.0234 -6.3265 4.0616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154443318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:40 Heat of formation + Delta-G solvation = -44.727226 kcal Electronic energy + Delta-G solvation = -17185.975098 eV Core-core repulsion = 14443.833049 eV Total energy + Delta-G solvation = -2742.142049 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12250 -37.87270 -36.43920 -35.04685 -31.92265 -29.60775 -27.40972 -27.03368 -25.33648 -23.84602 -21.16043 -20.35863 -19.29814 -18.72040 -17.09605 -16.36507 -15.51044 -15.22987 -14.63381 -14.37494 -13.97315 -13.69051 -13.34890 -13.00749 -12.51179 -12.31422 -12.08334 -11.92874 -11.66804 -11.50083 -11.21472 -10.94919 -10.85613 -10.50315 -10.30832 -10.15413 -9.86959 -9.76398 -9.69991 -9.33067 -8.89922 -8.43817 -8.12328 -6.02955 -4.07632 2.67881 3.30394 3.34480 3.36962 3.40424 3.82708 4.41668 4.65846 4.81130 4.91915 5.08661 5.24992 5.28045 5.51236 5.62724 5.65550 5.71399 5.90872 5.99780 6.01208 6.03541 6.07249 6.21490 6.23124 6.34023 6.50061 6.56217 6.68985 6.78837 7.02987 7.21101 7.39491 7.53115 7.89563 8.37318 8.58836 8.92731 9.57367 11.06805 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.007096 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.973442 B = 3945.090519 C = 4582.327399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.145 4.145 5 C -0.159 4.159 6 H 0.132 0.868 7 C 0.482 3.518 8 O -0.523 6.523 9 O -0.321 6.321 10 C 0.118 3.882 11 C 0.034 3.966 12 C -0.480 4.480 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.210 4.210 21 C -0.145 4.145 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 6.643 -10.778 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.172 4.172 4 C -0.182 4.182 5 C -0.178 4.178 6 H 0.150 0.850 7 C 0.326 3.674 8 O -0.414 6.414 9 O -0.235 6.235 10 C 0.045 3.955 11 C 0.034 3.966 12 C -0.518 4.518 13 H 0.080 0.920 14 C -0.135 4.135 15 N -0.521 5.521 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.247 4.247 21 C -0.182 4.182 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.277 6.670 -10.574 12.505 hybrid contribution 0.663 0.205 0.762 1.031 sum 0.386 6.874 -9.812 11.987 Atomic orbital electron populations 1.21384 0.90709 1.01304 1.02749 1.21674 0.96048 0.90706 1.01461 1.21390 0.99892 0.93593 1.02359 1.23253 1.02803 1.01239 0.90940 1.21903 1.01968 0.98695 0.95202 0.84982 1.22474 0.87044 0.81272 0.76639 1.90590 1.16171 1.74624 1.60027 1.86574 1.41557 1.35552 1.59852 1.22709 0.90398 0.89001 0.93433 1.18792 0.97093 0.84216 0.96494 1.20302 0.92097 1.41050 0.98349 0.91959 1.24990 0.95914 0.95244 0.97308 1.69995 1.22738 1.45280 1.14115 0.86589 0.83444 0.79192 0.78767 1.20626 1.21262 1.19782 1.23116 1.01553 1.04251 0.95764 1.22517 0.95517 1.04500 0.95668 0.93295 0.91716 0.91281 0.91814 0.92187 0.91708 0.88271 0.87614 0.91338 0.94320 0.93033 0.91613 0.90062 0.89357 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 8.09 37.16 0.30 -1.14 16 2 C -0.10 -1.28 2.70 -154.51 -0.42 -1.69 16 3 C -0.12 -1.17 9.85 37.15 0.37 -0.80 16 4 C -0.15 -1.79 9.53 -26.69 -0.25 -2.05 16 5 C -0.16 -2.47 6.02 -91.73 -0.55 -3.02 16 6 H 0.13 1.94 8.14 -51.93 -0.42 1.52 16 7 C 0.48 9.74 7.72 36.01 0.28 10.02 16 8 O -0.52 -11.19 12.86 -18.75 -0.24 -11.43 16 9 O -0.32 -7.48 9.61 -39.25 -0.38 -7.85 16 10 C 0.12 2.85 5.53 37.16 0.21 3.05 16 11 C 0.03 0.87 1.81 -155.66 -0.28 0.59 16 12 C -0.48 -13.23 8.24 -34.44 -0.28 -13.51 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.07 1.88 5.41 -17.82 -0.10 1.78 16 15 N -0.88 -25.26 12.80 55.43 0.71 -24.55 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.21 -4.61 9.88 -26.72 -0.26 -4.88 16 21 C -0.14 -3.40 9.33 -26.73 -0.25 -3.65 16 22 H 0.05 0.55 7.93 -51.93 -0.41 0.13 16 23 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 24 H 0.07 1.09 7.27 -51.93 -0.38 0.71 16 25 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 27 H 0.06 0.57 7.93 -51.93 -0.41 0.15 16 28 H 0.10 1.24 8.05 -51.93 -0.42 0.83 16 29 H 0.11 1.04 8.05 -51.93 -0.42 0.62 16 30 H 0.07 1.79 8.13 -51.93 -0.42 1.37 16 31 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 36 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -29.81 305.38 -7.30 -37.11 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.72 Total: 1.14 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.25 Total: -15.29 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.71 Total: -24.55 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.62 Total: -19.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.81 -7.30 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154443318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.619 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds