Wall clock time and date at job start Sun Mar 29 2020 22:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 115.55077 * 2 1 4 4 C 1.53007 * 117.49859 * 214.33218 * 2 1 3 5 5 C 1.53004 * 117.49783 * 145.67655 * 2 1 3 6 6 H 1.09002 * 117.49355 * 214.97569 * 5 2 1 7 7 C 1.50700 * 117.50097 * 359.97164 * 5 2 1 8 8 O 1.20827 * 119.99468 * 0.02562 * 7 5 2 9 9 O 1.34228 * 119.99937 * 180.02562 * 7 5 2 10 10 C 1.45199 * 116.99633 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.50704 * 115.54824 * 39.89452 * 11 10 9 13 13 H 1.07997 * 120.00569 * 264.97103 * 12 11 10 14 14 C 1.37884 * 119.99225 * 84.97580 * 12 11 10 15 15 N 1.31514 * 120.00352 * 358.42383 * 14 12 11 16 16 Si 1.86805 * 119.99482 * 178.42961 * 14 12 11 17 17 H 1.48493 * 109.47291 * 89.99626 * 16 14 12 18 18 H 1.48503 * 109.46610 * 209.99894 * 16 14 12 19 19 H 1.48502 * 109.46982 * 329.99667 * 16 14 12 20 20 C 1.53006 * 117.50168 * 254.19555 * 11 10 9 21 21 C 1.53001 * 117.50109 * 185.56926 * 11 10 9 22 22 H 1.09003 * 109.47273 * 34.41515 * 1 2 3 23 23 H 1.09002 * 109.47446 * 154.41402 * 1 2 3 24 24 H 1.09004 * 109.47049 * 274.41128 * 1 2 3 25 25 H 1.09009 * 109.46955 * 85.58875 * 3 2 1 26 26 H 1.09006 * 109.47173 * 205.58099 * 3 2 1 27 27 H 1.08995 * 109.47543 * 325.58658 * 3 2 1 28 28 H 1.09000 * 117.49603 * 0.02562 * 4 2 1 29 29 H 1.08994 * 117.49836 * 145.01673 * 4 2 1 30 30 H 1.08994 * 109.47719 * 300.00465 * 10 9 7 31 31 H 1.09005 * 109.46967 * 60.01024 * 10 9 7 32 32 H 0.96993 * 119.99479 * 180.02562 * 15 14 12 33 33 H 1.08999 * 117.49820 * 359.97438 * 20 11 10 34 34 H 1.08994 * 117.50145 * 145.01930 * 20 11 10 35 35 H 1.08999 * 117.49631 * 214.97908 * 21 11 10 36 36 H 1.08993 * 117.49697 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 2.2364 -1.1208 -0.7655 5 6 2.2364 -1.1209 0.7653 6 1 3.1715 -0.8748 1.2684 7 6 1.3720 -2.1400 1.4619 8 8 0.1683 -2.0529 1.4024 9 8 1.9393 -3.1443 2.1483 10 6 1.0452 -4.0886 2.7944 11 6 1.8679 -5.1533 3.5227 12 6 3.0970 -4.6504 4.2351 13 1 4.0581 -4.6849 3.7437 14 6 2.9944 -4.1462 5.5143 15 7 1.8195 -4.0754 6.1010 16 14 4.5243 -3.5633 6.4139 17 1 4.7465 -2.1227 6.1306 18 1 4.3438 -3.7585 7.8749 19 1 5.6987 -4.3457 5.9513 20 6 1.9359 -6.5464 2.8935 21 6 1.1088 -6.3187 4.1605 22 1 -0.3634 0.8478 -0.5808 23 1 -0.3634 -0.9269 -0.4438 24 1 -0.3633 0.0790 1.0247 25 1 2.2752 1.7422 1.0247 26 1 3.1829 1.3083 -0.4438 27 1 1.5817 2.0738 -0.5807 28 1 1.6112 -1.8578 -1.2694 29 1 3.1714 -0.8747 -1.2687 30 1 0.4170 -3.5613 3.5123 31 1 0.4163 -4.5660 2.0429 32 1 1.7474 -3.7204 7.0008 33 1 1.3943 -6.7044 1.9609 34 1 2.8698 -7.0992 2.9947 35 1 1.4987 -6.7218 5.0952 36 1 0.0234 -6.3265 4.0616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154443318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:39 Heat of formation + Delta-G solvation = -59.896048 kcal Electronic energy + Delta-G solvation = -17186.632868 eV Core-core repulsion = 14443.833049 eV Total energy + Delta-G solvation = -2742.799818 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63682 -39.30352 -38.14005 -36.76316 -34.01551 -30.69373 -28.79435 -28.36189 -27.38518 -25.23427 -22.99106 -21.69821 -21.22830 -19.95780 -18.71412 -18.19224 -17.27369 -16.88366 -16.55165 -15.78251 -15.38846 -14.94925 -14.59016 -14.56043 -14.11078 -13.72102 -13.54874 -13.40854 -12.96896 -12.89041 -12.86020 -12.68891 -12.37180 -12.19070 -12.12881 -11.60458 -11.56891 -11.23844 -11.18031 -10.88651 -10.68773 -10.47099 -10.02795 -8.12682 -6.23274 1.16899 1.40963 1.41571 1.51941 1.83680 2.42551 2.69011 3.16784 3.36374 3.56355 3.72340 3.79278 4.10831 4.14746 4.15200 4.34393 4.45755 4.61008 4.65428 4.79869 4.80473 4.84985 4.94786 4.97812 5.02934 5.06471 5.08652 5.14431 5.29065 5.36945 5.48763 5.57744 5.74126 5.78662 6.34846 6.79712 6.92040 7.44627 8.96595 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.007096 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.973442 B = 3945.090519 C = 4582.327399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.121 4.121 5 C -0.187 4.187 6 H 0.140 0.860 7 C 0.473 3.527 8 O -0.542 6.542 9 O -0.340 6.340 10 C 0.129 3.871 11 C -0.002 4.002 12 C -0.493 4.493 13 H 0.054 0.946 14 C 0.021 3.979 15 N -0.914 5.914 16 Si 0.952 3.048 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.181 4.181 21 C -0.146 4.146 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.259 0.741 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 7.550 -12.484 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.092 4.092 3 C -0.169 4.169 4 C -0.158 4.158 5 C -0.206 4.206 6 H 0.158 0.842 7 C 0.319 3.681 8 O -0.434 6.434 9 O -0.255 6.255 10 C 0.056 3.944 11 C -0.002 4.002 12 C -0.530 4.530 13 H 0.073 0.927 14 C -0.179 4.179 15 N -0.552 5.552 16 Si 0.778 3.222 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.218 4.218 21 C -0.184 4.184 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.159 0.841 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.986 7.576 -12.297 14.477 hybrid contribution 0.215 -0.067 1.235 1.256 sum 1.201 7.508 -11.062 13.423 Atomic orbital electron populations 1.21346 0.91716 1.01713 1.01330 1.21892 0.95472 0.91955 0.99888 1.21435 1.01037 0.91775 1.02663 1.23444 1.03993 1.00154 0.88220 1.22050 1.02193 0.99189 0.97184 0.84234 1.23464 0.87615 0.81078 0.75961 1.90574 1.17247 1.74969 1.60641 1.86576 1.41940 1.36484 1.60544 1.22402 0.90167 0.88806 0.93067 1.18946 0.97263 0.85672 0.98353 1.20538 0.92649 1.41098 0.98764 0.92745 1.25715 0.98596 0.95451 0.98127 1.70109 1.24537 1.46247 1.14292 0.85646 0.80305 0.78708 0.77580 1.20350 1.20907 1.18891 1.23129 1.01478 1.01193 0.95969 1.22434 0.96260 1.03883 0.95774 0.90328 0.93419 0.94026 0.92337 0.90212 0.89852 0.88641 0.84137 0.94674 0.92917 0.93175 0.88908 0.89550 0.91239 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.76 8.09 71.98 0.58 -2.18 16 2 C -0.09 -2.18 2.70 -52.18 -0.14 -2.32 16 3 C -0.11 -1.90 9.85 71.98 0.71 -1.19 16 4 C -0.12 -2.66 9.53 30.62 0.29 -2.37 16 5 C -0.19 -5.63 6.02 -11.51 -0.07 -5.70 16 6 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 7 C 0.47 19.41 7.72 71.24 0.55 19.96 16 8 O -0.54 -23.85 12.86 21.96 0.28 -23.56 16 9 O -0.34 -16.15 9.61 -51.40 -0.49 -16.64 16 10 C 0.13 6.38 5.53 71.98 0.40 6.78 16 11 C 0.00 -0.10 1.81 -52.92 -0.10 -0.19 16 12 C -0.49 -27.43 8.24 25.60 0.21 -27.22 16 13 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 14 C 0.02 1.15 5.41 84.66 0.46 1.61 16 15 N -0.91 -53.33 12.80 21.45 0.27 -53.06 16 16 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 C -0.18 -7.72 9.88 30.60 0.30 -7.42 16 21 C -0.15 -6.89 9.33 30.60 0.29 -6.60 16 22 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16 23 H 0.05 1.40 7.02 -2.39 -0.02 1.38 16 24 H 0.04 1.32 7.27 -2.38 -0.02 1.30 16 25 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.08 1.05 7.90 -2.38 -0.02 1.04 16 27 H 0.08 1.12 7.93 -2.39 -0.02 1.10 16 28 H 0.10 2.19 8.05 -2.39 -0.02 2.17 16 29 H 0.14 2.13 8.05 -2.39 -0.02 2.11 16 30 H 0.03 1.92 8.13 -2.39 -0.02 1.90 16 31 H 0.05 2.38 7.94 -2.38 -0.02 2.36 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.09 3.45 8.08 -2.39 -0.02 3.43 16 34 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -65.38 305.38 6.62 -58.77 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.04 Total: 15.36 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.48 Total: -26.83 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.27 Total: -53.06 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.21 Total: -40.21 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.38 6.62 -58.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154443318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.130 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds