Wall clock time and date at job start Sun Mar 29 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48503 * 109.47183 * 270.00312 * 3 2 1 5 5 H 1.48501 * 109.46784 * 29.99682 * 3 2 1 6 6 H 1.48495 * 109.47332 * 149.99937 * 3 2 1 7 7 C 1.37879 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99539 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46808 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.34230 * 117.00207 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00012 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99809 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47031 * 179.97438 * 14 12 11 16 16 C 1.29445 * 117.95895 * 94.73363 * 15 14 12 17 17 C 1.50074 * 124.07477 * 180.75080 * 16 15 14 18 18 C 1.53016 * 110.14671 * 342.87319 * 17 16 15 19 19 C 1.53391 * 108.44058 * 49.43435 * 18 17 16 20 20 C 1.50066 * 117.96583 * 275.00349 * 15 14 12 21 21 H 0.97003 * 119.99969 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47243 * 59.99740 * 9 7 2 23 23 H 1.09003 * 109.46778 * 299.99209 * 9 7 2 24 24 H 1.08996 * 109.47296 * 59.99938 * 10 9 7 25 25 H 1.09006 * 109.47353 * 299.99907 * 10 9 7 26 26 H 1.08999 * 109.47012 * 59.99823 * 14 12 11 27 27 H 1.08997 * 109.47081 * 300.00004 * 14 12 11 28 28 H 1.07999 * 117.96176 * 0.73020 * 16 15 14 29 29 H 1.09002 * 109.35609 * 222.66402 * 17 16 15 30 30 H 1.09003 * 109.35439 * 103.08085 * 17 16 15 31 31 H 1.09003 * 109.64533 * 289.75036 * 18 17 16 32 32 H 1.09000 * 109.64519 * 169.11862 * 18 17 16 33 33 H 1.09001 * 109.64689 * 172.88318 * 19 18 17 34 34 H 1.09003 * 109.64136 * 52.25083 * 19 18 17 35 35 H 1.09003 * 109.35468 * 282.79297 * 20 15 14 36 36 H 1.08998 * 109.35916 * 42.51411 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 8 5.4735 -2.6366 -0.0001 12 6 6.0829 -3.8326 0.0003 13 8 5.4249 -4.8459 0.0012 14 6 7.5878 -3.9115 -0.0003 15 6 8.0151 -5.3566 0.0010 16 6 8.2772 -5.9130 -1.1380 17 6 8.6972 -7.3449 -1.2975 18 6 9.1746 -7.9066 0.0434 19 6 8.1218 -7.5782 1.1095 20 6 8.1044 -6.0629 1.3220 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6808 0.8905 23 1 3.8751 -0.6797 -0.8896 24 1 3.6585 -3.1502 -0.8903 25 1 3.6578 -3.1507 0.8897 26 1 7.9779 -3.4168 0.8892 27 1 7.9771 -3.4179 -0.8907 28 1 8.1876 -5.3093 -2.0290 29 1 9.5080 -7.4048 -2.0236 30 1 7.8511 -7.9320 -1.6545 31 1 10.1259 -7.4486 0.3147 32 1 9.2935 -8.9873 -0.0334 33 1 8.3790 -8.0763 2.0443 34 1 7.1409 -7.9120 0.7708 35 1 9.0181 -5.7592 1.8330 36 1 7.2426 -5.7957 1.9336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171626535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:35 Heat of formation + Delta-G solvation = -102.334112 kcal Electronic energy + Delta-G solvation = -16449.646332 eV Core-core repulsion = 13705.006261 eV Total energy + Delta-G solvation = -2744.640071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18046 -38.56800 -36.12456 -33.34572 -33.03662 -30.89756 -30.76187 -27.90796 -25.07514 -23.42844 -22.18718 -20.77906 -20.41822 -17.77551 -17.38235 -16.57188 -16.17606 -16.07669 -15.39456 -14.41964 -14.22770 -14.21162 -13.85400 -13.25508 -13.02765 -12.78031 -12.50530 -12.30776 -12.25592 -11.90181 -11.42597 -11.26904 -10.94450 -10.69252 -10.62126 -10.54631 -10.38741 -9.96605 -9.90752 -9.68713 -9.34993 -8.90613 -8.62553 -6.13105 -4.14273 2.01321 2.56648 3.27655 3.32821 3.35635 3.39572 4.38428 4.41548 4.53581 4.76507 4.96748 5.04788 5.19968 5.20432 5.25966 5.31746 5.43421 5.45186 5.52095 5.66550 5.77360 5.80807 5.91892 5.98351 5.99178 6.01958 6.19005 6.45787 6.50258 6.82233 6.87820 7.20689 7.23176 7.62591 8.19265 8.39774 8.88644 9.46479 10.99516 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059200 B = 0.003999 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.856519 B = 6999.318264 C = 7137.865335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.364 6.364 12 C 0.455 3.545 13 O -0.508 6.508 14 C -0.084 4.084 15 C -0.106 4.106 16 C -0.144 4.144 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.081 4.081 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.399 -11.521 0.224 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.281 6.281 12 C 0.298 3.702 13 O -0.397 6.397 14 C -0.122 4.122 15 C -0.107 4.107 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.118 4.118 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.983 -11.673 0.225 23.143 hybrid contribution 0.064 0.942 -0.098 0.949 sum 20.046 -10.732 0.127 22.738 Atomic orbital electron populations 1.69900 1.06289 1.27207 1.50145 1.24945 0.94774 0.99201 0.94127 0.86739 0.80416 0.83240 0.78738 1.20055 1.21161 1.18763 1.20854 0.88320 0.95039 1.52345 0.90673 1.19624 0.96988 0.90233 0.97838 1.23355 0.72450 1.01479 1.01694 1.86483 1.26209 1.32403 1.83002 1.23474 0.91552 0.82111 0.73095 1.90643 1.67282 1.36608 1.45126 1.20510 0.89260 0.96420 1.05997 1.20337 1.00601 0.93931 0.95787 1.21922 1.00549 0.96786 0.96928 1.20417 1.00855 0.93540 0.97680 1.21605 0.98730 1.00348 0.95049 1.21584 0.99799 0.95511 0.98774 1.20359 1.02043 0.94824 0.94540 0.92432 0.95405 0.95839 0.91826 0.91772 0.87428 0.87521 0.87912 0.91213 0.90739 0.91831 0.91840 0.91764 0.91376 0.90992 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.81 5.40 37.16 0.20 2.01 16 11 O -0.36 -7.01 10.22 -39.26 -0.40 -7.41 16 12 C 0.46 7.72 7.95 36.00 0.29 8.00 16 13 O -0.51 -10.01 15.78 -18.75 -0.30 -10.30 16 14 C -0.08 -1.00 5.82 -29.04 -0.17 -1.17 16 15 C -0.11 -1.23 4.33 -100.94 -0.44 -1.67 16 16 C -0.14 -1.56 9.37 -35.90 -0.34 -1.90 16 17 C -0.09 -0.80 6.11 -28.18 -0.17 -0.97 16 18 C -0.12 -0.99 6.01 -26.52 -0.16 -1.15 16 19 C -0.12 -1.14 6.01 -26.52 -0.16 -1.30 16 20 C -0.08 -0.85 5.80 -28.18 -0.16 -1.01 16 21 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 23 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 24 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 25 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 26 H 0.11 1.06 8.11 -51.93 -0.42 0.64 16 27 H 0.11 1.07 7.80 -51.93 -0.41 0.66 16 28 H 0.10 1.07 7.74 -52.49 -0.41 0.66 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -31.92 300.64 -7.54 -39.45 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.81 Total: -3.34 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.66 Total: -13.02 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.77 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.70 Total: -17.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.92 -7.54 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171626535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.881 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds