Wall clock time and date at job start Sun Mar 29 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48503 * 109.47183 * 270.00312 * 3 2 1 5 5 H 1.48501 * 109.46784 * 29.99682 * 3 2 1 6 6 H 1.48495 * 109.47332 * 149.99937 * 3 2 1 7 7 C 1.37879 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99539 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46808 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.34230 * 117.00207 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00012 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99809 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47031 * 179.97438 * 14 12 11 16 16 C 1.29445 * 117.95895 * 94.73363 * 15 14 12 17 17 C 1.50074 * 124.07477 * 180.75080 * 16 15 14 18 18 C 1.53016 * 110.14671 * 342.87319 * 17 16 15 19 19 C 1.53391 * 108.44058 * 49.43435 * 18 17 16 20 20 C 1.50066 * 117.96583 * 275.00349 * 15 14 12 21 21 H 0.97003 * 119.99969 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47243 * 59.99740 * 9 7 2 23 23 H 1.09003 * 109.46778 * 299.99209 * 9 7 2 24 24 H 1.08996 * 109.47296 * 59.99938 * 10 9 7 25 25 H 1.09006 * 109.47353 * 299.99907 * 10 9 7 26 26 H 1.08999 * 109.47012 * 59.99823 * 14 12 11 27 27 H 1.08997 * 109.47081 * 300.00004 * 14 12 11 28 28 H 1.07999 * 117.96176 * 0.73020 * 16 15 14 29 29 H 1.09002 * 109.35609 * 222.66402 * 17 16 15 30 30 H 1.09003 * 109.35439 * 103.08085 * 17 16 15 31 31 H 1.09003 * 109.64533 * 289.75036 * 18 17 16 32 32 H 1.09000 * 109.64519 * 169.11862 * 18 17 16 33 33 H 1.09001 * 109.64689 * 172.88318 * 19 18 17 34 34 H 1.09003 * 109.64136 * 52.25083 * 19 18 17 35 35 H 1.09003 * 109.35468 * 282.79297 * 20 15 14 36 36 H 1.08998 * 109.35916 * 42.51411 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 8 5.4735 -2.6366 -0.0001 12 6 6.0829 -3.8326 0.0003 13 8 5.4249 -4.8459 0.0012 14 6 7.5878 -3.9115 -0.0003 15 6 8.0151 -5.3566 0.0010 16 6 8.2772 -5.9130 -1.1380 17 6 8.6972 -7.3449 -1.2975 18 6 9.1746 -7.9066 0.0434 19 6 8.1218 -7.5782 1.1095 20 6 8.1044 -6.0629 1.3220 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6808 0.8905 23 1 3.8751 -0.6797 -0.8896 24 1 3.6585 -3.1502 -0.8903 25 1 3.6578 -3.1507 0.8897 26 1 7.9779 -3.4168 0.8892 27 1 7.9771 -3.4179 -0.8907 28 1 8.1876 -5.3093 -2.0290 29 1 9.5080 -7.4048 -2.0236 30 1 7.8511 -7.9320 -1.6545 31 1 10.1259 -7.4486 0.3147 32 1 9.2935 -8.9873 -0.0334 33 1 8.3790 -8.0763 2.0443 34 1 7.1409 -7.9120 0.7708 35 1 9.0181 -5.7592 1.8330 36 1 7.2426 -5.7957 1.9336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171626535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:34 Heat of formation + Delta-G solvation = -120.060365 kcal Electronic energy + Delta-G solvation = -16450.415000 eV Core-core repulsion = 13705.006261 eV Total energy + Delta-G solvation = -2745.408739 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55289 -39.47615 -37.63408 -35.40950 -33.99084 -32.76185 -31.64998 -28.98236 -26.94886 -24.22269 -23.26132 -22.55831 -21.70116 -19.27000 -18.58398 -18.22565 -17.64483 -17.35429 -16.39563 -16.29789 -15.51627 -15.24605 -14.84669 -14.65056 -14.44008 -14.19912 -13.60233 -13.32961 -13.22763 -13.08549 -13.01970 -12.69226 -12.47266 -12.43174 -11.82133 -11.66025 -11.58686 -11.48950 -11.44766 -11.32980 -11.10679 -10.82768 -9.75355 -8.36029 -6.44707 1.07690 1.21458 1.37533 1.39444 1.52358 2.00468 2.33514 2.98741 3.55944 3.76606 3.88283 4.06762 4.13619 4.18398 4.23960 4.32432 4.43847 4.51866 4.60429 4.65932 4.71405 4.74172 4.98459 5.02020 5.04603 5.09199 5.17881 5.26729 5.31506 5.47068 5.48935 5.57114 5.72097 6.03860 6.13718 6.61316 6.76151 7.20569 8.80224 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059200 B = 0.003999 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.856519 B = 6999.318264 C = 7137.865335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.033 0.967 9 C -0.003 4.003 10 C 0.094 3.906 11 O -0.364 6.364 12 C 0.452 3.548 13 O -0.541 6.541 14 C -0.075 4.075 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.092 4.092 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.083 4.083 21 H 0.271 0.729 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.514 -10.707 0.119 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.051 0.949 9 C -0.040 4.040 10 C 0.020 3.980 11 O -0.280 6.280 12 C 0.297 3.703 13 O -0.431 6.431 14 C -0.112 4.112 15 C -0.125 4.125 16 C -0.163 4.163 17 C -0.129 4.129 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.119 4.119 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 23.120 -10.881 0.120 25.553 hybrid contribution -0.938 0.554 -0.084 1.093 sum 22.182 -10.327 0.035 24.468 Atomic orbital electron populations 1.70048 1.08383 1.28692 1.51310 1.25988 0.95701 1.03693 0.93327 0.85567 0.79513 0.77466 0.79594 1.18707 1.20521 1.16671 1.21129 0.90807 0.93773 1.52581 0.94869 1.19460 0.94103 0.91951 0.98508 1.22898 0.74542 0.99742 1.00809 1.86478 1.24156 1.33952 1.83449 1.24613 0.93468 0.80772 0.71484 1.90636 1.68401 1.37428 1.46611 1.20681 0.84770 0.97435 1.08325 1.20478 1.01583 0.94002 0.96472 1.22207 0.99502 0.97718 0.96853 1.20499 1.01264 0.92347 0.98759 1.21599 0.98507 1.01268 0.93914 1.21598 0.99172 0.95092 1.00000 1.20395 1.02123 0.95368 0.94054 0.92001 0.94561 0.94679 0.92814 0.92764 0.84908 0.85072 0.87557 0.89295 0.91464 0.90705 0.90537 0.90362 0.93695 0.88864 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.96 43.56 27.47 68.60 1.88 45.44 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.24 -10.25 6.54 99.48 0.65 -9.59 16 7 C -0.55 -32.04 9.66 25.60 0.25 -31.79 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 9 C 0.00 -0.13 4.42 29.85 0.13 0.00 16 10 C 0.09 4.12 5.40 71.98 0.39 4.51 16 11 O -0.36 -13.56 10.22 -51.41 -0.53 -14.08 16 12 C 0.45 14.88 7.95 71.24 0.57 15.44 16 13 O -0.54 -21.46 15.78 21.98 0.35 -21.12 16 14 C -0.08 -1.60 5.82 29.10 0.17 -1.43 16 15 C -0.13 -2.66 4.33 -15.10 -0.07 -2.72 16 16 C -0.14 -2.87 9.37 27.04 0.25 -2.62 16 17 C -0.09 -1.48 6.11 29.66 0.18 -1.30 16 18 C -0.12 -1.64 6.01 30.73 0.18 -1.46 16 19 C -0.12 -2.17 6.01 30.73 0.18 -1.98 16 20 C -0.08 -1.62 5.80 29.66 0.17 -1.44 16 21 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 22 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 23 H 0.03 1.61 7.57 -2.39 -0.02 1.60 16 24 H 0.05 2.44 8.13 -2.39 -0.02 2.42 16 25 H 0.05 2.46 8.13 -2.38 -0.02 2.44 16 26 H 0.13 2.19 8.11 -2.39 -0.02 2.17 16 27 H 0.13 2.18 7.80 -2.39 -0.02 2.16 16 28 H 0.11 1.98 7.74 -2.91 -0.02 1.96 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.02 300.64 5.86 -64.15 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.98 Total: 8.21 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 2.88 Total: -23.71 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.18 Total: -35.20 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -70.02 5.86 -64.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171626535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.906 kcal (2) G-P(sol) polarization free energy of solvation -70.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds