Wall clock time and date at job start Sun Mar 29 2020 22:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99588 * 2 1 4 4 H 1.48496 * 109.47629 * 270.00118 * 3 2 1 5 5 H 1.48508 * 109.47242 * 30.00604 * 3 2 1 6 6 H 1.48498 * 109.47092 * 149.99947 * 3 2 1 7 7 C 1.37872 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00034 * 163.78611 * 7 2 1 9 9 C 1.50698 * 120.00067 * 343.78295 * 7 2 1 10 10 C 1.52998 * 115.55081 * 324.62430 * 9 7 2 11 11 O 1.45200 * 109.47385 * 306.23923 * 10 9 7 12 12 C 1.34229 * 116.99957 * 182.05742 * 11 10 9 13 13 O 1.20826 * 119.99979 * 4.74628 * 12 11 10 14 14 C 1.50692 * 120.00170 * 184.75276 * 12 11 10 15 15 C 1.55243 * 110.57909 * 260.40459 * 14 12 11 16 16 C 1.54886 * 102.58696 * 203.33420 * 15 14 12 17 17 C 1.54265 * 104.31483 * 37.93305 * 16 15 14 18 18 C 1.53879 * 106.59650 * 336.32321 * 17 16 15 19 19 C 1.52997 * 117.50154 * 110.30175 * 9 7 2 20 20 C 1.53007 * 117.49787 * 178.96141 * 9 7 2 21 21 H 0.96995 * 120.00104 * 5.03281 * 1 2 3 22 22 H 1.09002 * 109.47542 * 186.22930 * 10 9 7 23 23 H 1.09003 * 109.46698 * 66.23886 * 10 9 7 24 24 H 1.09001 * 110.43773 * 22.98599 * 14 12 11 25 25 H 1.09000 * 110.89687 * 85.04951 * 15 14 12 26 26 H 1.08995 * 110.76601 * 321.57119 * 15 14 12 27 27 H 1.09004 * 110.49253 * 279.18538 * 16 15 14 28 28 H 1.09001 * 110.48497 * 156.67734 * 16 15 14 29 29 H 1.09000 * 110.03056 * 95.60248 * 17 16 15 30 30 H 1.08995 * 110.03525 * 216.99121 * 17 16 15 31 31 H 1.08994 * 110.03056 * 119.28374 * 18 17 16 32 32 H 1.09001 * 110.02709 * 240.66311 * 18 17 16 33 33 H 1.09001 * 117.50114 * 215.00646 * 19 9 7 34 34 H 1.09003 * 117.49864 * 0.02562 * 19 9 7 35 35 H 1.08994 * 117.49685 * 359.97044 * 20 9 7 36 36 H 1.09001 * 117.49648 * 144.97395 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0524 -1.2125 -0.2617 9 6 1.2961 -2.4733 0.3634 10 6 0.2238 -2.3484 1.4475 11 8 0.7954 -1.7164 2.6232 12 6 -0.0086 -1.5702 3.6881 13 8 -1.1244 -2.0334 3.6708 14 6 0.4804 -0.8283 4.9051 15 6 0.9453 -1.8244 6.0013 16 6 0.8176 -0.9848 7.2965 17 6 -0.4629 -0.1508 7.0857 18 6 -0.6773 -0.0513 5.5652 19 6 1.0558 -3.4903 -0.7541 20 6 2.1098 -3.7683 0.3205 21 1 -0.4850 0.8368 -0.0737 22 1 -0.1442 -3.3401 1.7107 23 1 -0.6015 -1.7421 1.0741 24 1 1.2910 -0.1505 4.6375 25 1 1.9795 -2.1275 5.8379 26 1 0.2882 -2.6933 6.0377 27 1 1.6827 -0.3323 7.4152 28 1 0.7103 -1.6358 8.1642 29 1 -1.3136 -0.6487 7.5509 30 1 -0.3346 0.8444 7.5113 31 1 -1.6320 -0.5009 5.2926 32 1 -0.6536 0.9926 5.2524 33 1 0.1336 -4.0703 -0.7170 34 1 1.4105 -3.2343 -1.7525 35 1 3.1574 -3.6950 0.0287 36 1 1.8814 -4.5311 1.0649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174743556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:03 Heat of formation + Delta-G solvation = -80.253777 kcal Electronic energy + Delta-G solvation = -17439.963188 eV Core-core repulsion = 14696.280593 eV Total energy + Delta-G solvation = -2743.682596 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83351 -37.56287 -36.44675 -34.94012 -32.15875 -29.47565 -28.66178 -26.48997 -25.30876 -22.13736 -21.20054 -20.46763 -19.21227 -19.10917 -17.19111 -16.58933 -15.59703 -15.39177 -15.20383 -14.57390 -14.01273 -13.66569 -13.32755 -13.03838 -12.38344 -12.01537 -11.68812 -11.56749 -11.20474 -11.08747 -11.01079 -10.93714 -10.84958 -10.67636 -10.49176 -10.36665 -10.29815 -9.85591 -9.49663 -9.33508 -9.15504 -8.73555 -8.08125 -6.07977 -4.06913 2.93941 3.26379 3.34405 3.39879 3.59989 4.36764 4.60850 4.68809 4.88256 4.99810 5.43962 5.49153 5.50875 5.52972 5.61060 5.67044 5.72170 5.90540 5.93666 6.03664 6.09152 6.20636 6.23783 6.33852 6.42759 6.47596 6.62704 6.65528 6.83079 6.98639 7.26832 7.38054 7.57662 7.88767 8.35272 8.68219 8.86894 9.51058 10.95864 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.008198 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.045487 B = 3414.511301 C = 4092.470772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.486 4.486 8 H 0.063 0.937 9 C 0.048 3.952 10 C 0.114 3.886 11 O -0.326 6.326 12 C 0.462 3.538 13 O -0.529 6.529 14 C -0.089 4.089 15 C -0.110 4.110 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.192 4.192 20 C -0.209 4.209 21 H 0.263 0.737 22 H 0.028 0.972 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 -0.639 11.279 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.127 4.127 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.523 4.523 8 H 0.081 0.919 9 C 0.048 3.952 10 C 0.041 3.959 11 O -0.240 6.240 12 C 0.305 3.695 13 O -0.420 6.420 14 C -0.109 4.109 15 C -0.148 4.148 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.230 4.230 20 C -0.247 4.247 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.394 -0.657 11.292 11.318 hybrid contribution 0.300 0.757 -0.264 0.856 sum 0.694 0.100 11.028 11.050 Atomic orbital electron populations 1.69855 1.06201 1.27030 1.48581 1.24924 0.94672 0.99168 0.93918 0.86596 0.80266 0.83117 0.78147 1.20714 1.21028 1.19516 1.20372 0.95889 0.89407 1.46587 0.91929 1.18876 0.94617 0.89259 0.92461 1.22742 0.98051 0.94280 0.80796 1.86508 1.43235 1.71869 1.22368 1.23327 0.83667 0.77589 0.84885 1.90553 1.21383 1.47352 1.82737 1.21871 1.00189 0.97776 0.91055 1.22521 1.01848 0.97456 0.92945 1.22347 0.98046 0.98303 0.97256 1.22114 0.97963 1.00042 0.95748 1.22163 0.98591 1.00122 0.94524 1.22964 0.98429 1.06205 0.95445 1.22962 0.96544 1.02578 1.02583 0.92711 0.95357 0.87471 0.87851 0.90463 0.90849 0.91293 0.91433 0.91677 0.91730 0.89928 0.91249 0.91524 0.89769 0.90296 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 11.04 55.43 0.61 -24.08 16 2 C 0.08 2.08 5.11 -17.82 -0.09 1.99 16 3 Si 0.89 20.98 29.57 -169.99 -5.03 15.96 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.49 -13.30 8.74 -34.44 -0.30 -13.60 16 8 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 9 C 0.05 1.23 2.09 -155.66 -0.33 0.90 16 10 C 0.11 2.88 4.65 37.16 0.17 3.06 16 11 O -0.33 -7.89 9.87 -39.26 -0.39 -8.28 16 12 C 0.46 9.88 7.02 36.00 0.25 10.13 16 13 O -0.53 -12.32 15.55 -18.75 -0.29 -12.61 16 14 C -0.09 -1.46 3.35 -89.93 -0.30 -1.76 16 15 C -0.11 -1.46 6.35 -24.55 -0.16 -1.62 16 16 C -0.12 -1.29 6.82 -25.07 -0.17 -1.47 16 17 C -0.12 -1.35 6.80 -25.61 -0.17 -1.53 16 18 C -0.12 -1.68 6.33 -25.61 -0.16 -1.84 16 19 C -0.19 -4.39 9.96 -26.69 -0.27 -4.65 16 20 C -0.21 -4.62 9.92 -26.69 -0.26 -4.88 16 21 H 0.26 7.06 8.32 -40.82 -0.34 6.73 16 22 H 0.03 0.68 7.99 -51.93 -0.42 0.26 16 23 H 0.11 2.98 6.15 -51.93 -0.32 2.66 16 24 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.34 6.95 -51.93 -0.36 0.98 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -29.57 299.38 -8.08 -37.65 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.71 Total: 2.12 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.79 Total: -15.27 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.61 Total: -24.08 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.68 Total: -20.89 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.57 -8.08 -37.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.599 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds