Wall clock time and date at job start Sun Mar 29 2020 22:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99588 * 2 1 4 4 H 1.48496 * 109.47629 * 270.00118 * 3 2 1 5 5 H 1.48508 * 109.47242 * 30.00604 * 3 2 1 6 6 H 1.48498 * 109.47092 * 149.99947 * 3 2 1 7 7 C 1.37872 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00034 * 163.78611 * 7 2 1 9 9 C 1.50698 * 120.00067 * 343.78295 * 7 2 1 10 10 C 1.52998 * 115.55081 * 324.62430 * 9 7 2 11 11 O 1.45200 * 109.47385 * 306.23923 * 10 9 7 12 12 C 1.34229 * 116.99957 * 182.05742 * 11 10 9 13 13 O 1.20826 * 119.99979 * 4.74628 * 12 11 10 14 14 C 1.50692 * 120.00170 * 184.75276 * 12 11 10 15 15 C 1.55243 * 110.57909 * 260.40459 * 14 12 11 16 16 C 1.54886 * 102.58696 * 203.33420 * 15 14 12 17 17 C 1.54265 * 104.31483 * 37.93305 * 16 15 14 18 18 C 1.53879 * 106.59650 * 336.32321 * 17 16 15 19 19 C 1.52997 * 117.50154 * 110.30175 * 9 7 2 20 20 C 1.53007 * 117.49787 * 178.96141 * 9 7 2 21 21 H 0.96995 * 120.00104 * 5.03281 * 1 2 3 22 22 H 1.09002 * 109.47542 * 186.22930 * 10 9 7 23 23 H 1.09003 * 109.46698 * 66.23886 * 10 9 7 24 24 H 1.09001 * 110.43773 * 22.98599 * 14 12 11 25 25 H 1.09000 * 110.89687 * 85.04951 * 15 14 12 26 26 H 1.08995 * 110.76601 * 321.57119 * 15 14 12 27 27 H 1.09004 * 110.49253 * 279.18538 * 16 15 14 28 28 H 1.09001 * 110.48497 * 156.67734 * 16 15 14 29 29 H 1.09000 * 110.03056 * 95.60248 * 17 16 15 30 30 H 1.08995 * 110.03525 * 216.99121 * 17 16 15 31 31 H 1.08994 * 110.03056 * 119.28374 * 18 17 16 32 32 H 1.09001 * 110.02709 * 240.66311 * 18 17 16 33 33 H 1.09001 * 117.50114 * 215.00646 * 19 9 7 34 34 H 1.09003 * 117.49864 * 0.02562 * 19 9 7 35 35 H 1.08994 * 117.49685 * 359.97044 * 20 9 7 36 36 H 1.09001 * 117.49648 * 144.97395 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0524 -1.2125 -0.2617 9 6 1.2961 -2.4733 0.3634 10 6 0.2238 -2.3484 1.4475 11 8 0.7954 -1.7164 2.6232 12 6 -0.0086 -1.5702 3.6881 13 8 -1.1244 -2.0334 3.6708 14 6 0.4804 -0.8283 4.9051 15 6 0.9453 -1.8244 6.0013 16 6 0.8176 -0.9848 7.2965 17 6 -0.4629 -0.1508 7.0857 18 6 -0.6773 -0.0513 5.5652 19 6 1.0558 -3.4903 -0.7541 20 6 2.1098 -3.7683 0.3205 21 1 -0.4850 0.8368 -0.0737 22 1 -0.1442 -3.3401 1.7107 23 1 -0.6015 -1.7421 1.0741 24 1 1.2910 -0.1505 4.6375 25 1 1.9795 -2.1275 5.8379 26 1 0.2882 -2.6933 6.0377 27 1 1.6827 -0.3323 7.4152 28 1 0.7103 -1.6358 8.1642 29 1 -1.3136 -0.6487 7.5509 30 1 -0.3346 0.8444 7.5113 31 1 -1.6320 -0.5009 5.2926 32 1 -0.6536 0.9926 5.2524 33 1 0.1336 -4.0703 -0.7170 34 1 1.4105 -3.2343 -1.7525 35 1 3.1574 -3.6950 0.0287 36 1 1.8814 -4.5311 1.0649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:03 Heat of formation + Delta-G solvation = -94.981707 kcal Electronic energy + Delta-G solvation = -17440.601839 eV Core-core repulsion = 14696.280593 eV Total energy + Delta-G solvation = -2744.321247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49940 -39.03069 -38.06106 -36.75957 -34.20777 -30.70939 -29.69653 -28.32936 -27.34119 -23.60762 -22.97916 -21.43205 -21.14353 -20.56828 -18.80829 -18.50010 -17.25801 -17.09986 -16.50670 -16.41906 -15.66027 -15.19094 -14.69805 -14.37693 -13.98336 -13.81416 -13.54481 -13.01937 -12.82881 -12.81038 -12.35730 -12.24040 -12.16427 -12.12970 -12.04409 -11.76272 -11.63531 -11.43393 -11.29709 -11.16028 -11.12139 -10.65680 -10.05860 -8.12554 -6.17875 1.26043 1.39562 1.43241 1.53891 1.96636 2.41001 2.98849 3.47800 3.57989 3.60143 3.81505 4.14718 4.18194 4.34955 4.42609 4.45694 4.48030 4.50958 4.56764 4.72208 4.77042 4.87461 4.88948 4.97380 5.06189 5.14328 5.16023 5.22422 5.30387 5.35508 5.46166 5.49552 5.78425 5.80328 6.32116 6.76183 6.94693 7.42409 8.90073 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.008198 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.045487 B = 3414.511301 C = 4092.470772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.032 3.968 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.008 3.992 10 C 0.124 3.876 11 O -0.341 6.341 12 C 0.454 3.546 13 O -0.556 6.556 14 C -0.091 4.091 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.187 4.187 20 C -0.185 4.185 21 H 0.261 0.739 22 H 0.033 0.967 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -0.328 12.926 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.007 3.993 10 C 0.051 3.949 11 O -0.256 6.256 12 C 0.299 3.701 13 O -0.448 6.448 14 C -0.111 4.111 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.225 4.225 20 C -0.222 4.222 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.127 0.873 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.661 -0.354 12.942 13.053 hybrid contribution -0.124 0.607 -0.799 1.011 sum 1.537 0.253 12.143 12.243 Atomic orbital electron populations 1.69994 1.07429 1.27457 1.49589 1.25616 0.95346 1.02134 0.93710 0.85692 0.79181 0.79356 0.78369 1.20038 1.20873 1.18852 1.20620 0.95794 0.90782 1.46804 0.92406 1.19028 0.96266 0.90060 0.93924 1.22441 0.97268 0.93759 0.81447 1.86519 1.44097 1.72196 1.22798 1.24437 0.83217 0.77123 0.85277 1.90526 1.22470 1.48603 1.83187 1.22139 1.01033 0.98364 0.89519 1.22584 1.01957 0.96817 0.93218 1.22355 0.98240 0.98235 0.96187 1.22118 0.98689 1.01641 0.92825 1.22214 0.96551 0.99660 0.97123 1.22965 0.99429 1.05032 0.95047 1.22983 0.96635 1.00571 1.02026 0.92956 0.94897 0.90693 0.87336 0.89520 0.91895 0.89671 0.89269 0.91013 0.89551 0.92386 0.90877 0.90254 0.89937 0.89440 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.02 11.04 21.45 0.24 -51.79 16 2 C 0.03 1.78 5.11 84.65 0.43 2.21 16 3 Si 0.95 43.07 29.57 68.60 2.03 45.10 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.50 -27.68 8.74 25.60 0.22 -27.46 16 8 H 0.06 3.14 7.87 -2.91 -0.02 3.12 16 9 C 0.01 0.39 2.09 -52.93 -0.11 0.28 16 10 C 0.12 6.41 4.65 71.98 0.33 6.74 16 11 O -0.34 -16.84 9.87 -51.41 -0.51 -17.35 16 12 C 0.45 19.76 7.02 71.23 0.50 20.26 16 13 O -0.56 -26.67 15.55 21.96 0.34 -26.33 16 14 C -0.09 -2.92 3.35 -10.34 -0.03 -2.95 16 15 C -0.11 -2.68 6.35 32.01 0.20 -2.48 16 16 C -0.11 -2.00 6.82 31.67 0.22 -1.78 16 17 C -0.12 -2.25 6.80 31.32 0.21 -2.03 16 18 C -0.12 -3.30 6.33 31.32 0.20 -3.10 16 19 C -0.19 -8.39 9.96 30.62 0.30 -8.09 16 20 C -0.19 -7.89 9.92 30.62 0.30 -7.58 16 21 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 22 H 0.03 1.61 7.99 -2.39 -0.02 1.59 16 23 H 0.08 4.33 6.15 -2.39 -0.01 4.32 16 24 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.90 6.95 -2.39 -0.02 1.89 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -64.20 299.38 5.93 -58.28 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.04 Total: 18.05 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 2.78 Total: -25.97 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.24 Total: -51.79 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.17 Total: -43.67 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.20 5.93 -58.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.706 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds