Wall clock time and date at job start Sun Mar 29 2020 22:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47063 * 269.99550 * 3 2 1 5 5 H 1.48498 * 109.47221 * 29.99569 * 3 2 1 6 6 H 1.48499 * 109.47152 * 149.99923 * 3 2 1 7 7 C 1.37880 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99442 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46883 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47042 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00217 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99634 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00268 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47007 * 180.02562 * 14 12 11 16 16 C 1.53002 * 117.49888 * 231.25608 * 15 14 12 17 17 C 1.53000 * 117.50107 * 299.91370 * 15 14 12 18 18 C 1.52998 * 109.47102 * 300.00156 * 14 12 11 19 19 C 1.53002 * 117.49703 * 128.74279 * 18 14 12 20 20 C 1.53008 * 117.49851 * 60.08564 * 18 14 12 21 21 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47122 * 60.00590 * 9 7 2 23 23 H 1.08990 * 109.47222 * 299.99981 * 9 7 2 24 24 H 1.08994 * 109.46886 * 60.00290 * 10 9 7 25 25 H 1.09002 * 109.47298 * 300.00281 * 10 9 7 26 26 H 1.08997 * 109.46560 * 60.00371 * 14 12 11 27 27 H 1.09002 * 115.54951 * 85.58581 * 15 14 12 28 28 H 1.09000 * 117.49996 * 215.00804 * 16 15 14 29 29 H 1.08999 * 117.49664 * 0.02562 * 16 15 14 30 30 H 1.09008 * 117.49673 * 359.97438 * 17 15 14 31 31 H 1.08999 * 117.49942 * 144.97366 * 17 15 14 32 32 H 1.08995 * 115.55286 * 274.41797 * 18 14 12 33 33 H 1.09000 * 117.49904 * 0.02562 * 19 18 14 34 34 H 1.09004 * 117.49903 * 145.01779 * 19 18 14 35 35 H 1.08999 * 117.49594 * 214.97559 * 20 18 14 36 36 H 1.08998 * 117.49550 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 8 5.4734 -2.6367 0.0022 12 6 6.0828 -3.8327 0.0017 13 8 5.4247 -4.8460 -0.0002 14 6 7.5877 -3.9117 0.0022 15 6 8.0214 -5.3789 0.0009 16 6 9.0358 -5.8167 1.0594 17 6 7.5722 -6.2495 1.1761 18 6 8.1353 -3.2173 -1.2463 19 6 9.2281 -2.1651 -1.0475 20 6 7.8100 -1.7335 -1.4295 21 1 -0.4851 0.8400 -0.0004 22 1 3.8744 -0.6802 0.8911 23 1 3.8751 -0.6805 -0.8888 24 1 3.6584 -3.1502 -0.8892 25 1 3.6577 -3.1507 0.8907 26 1 7.9770 -3.4182 0.8927 27 1 8.0825 -5.8501 -0.9801 28 1 9.7642 -6.5759 0.7748 29 1 9.3937 -5.0595 1.7570 30 1 6.9679 -5.7768 1.9505 31 1 7.3373 -7.2934 0.9682 32 1 8.1887 -3.8352 -2.1426 33 1 9.5572 -1.9678 -0.0273 34 1 10.0003 -2.0905 -1.8132 35 1 7.6498 -1.3752 -2.4464 36 1 7.2055 -1.2522 -0.6607 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178765876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:26 Heat of formation + Delta-G solvation = -51.056703 kcal Electronic energy + Delta-G solvation = -16893.965792 eV Core-core repulsion = 14151.549277 eV Total energy + Delta-G solvation = -2742.416516 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37549 -37.99887 -36.64672 -35.75747 -33.28640 -30.86173 -29.53422 -25.28049 -22.74299 -22.34378 -21.98690 -21.27633 -20.61006 -19.79499 -17.47036 -16.61268 -16.40021 -15.77725 -15.60284 -15.03560 -14.21542 -14.14429 -13.80382 -13.30259 -12.96372 -12.43316 -11.78638 -11.77651 -11.61500 -11.53110 -11.29763 -11.22320 -10.73514 -10.68750 -10.58764 -10.45311 -10.31773 -9.99303 -9.92498 -9.66219 -9.57041 -9.32817 -8.62286 -6.12800 -4.13801 2.56095 2.99098 3.27464 3.34847 3.38991 3.81422 3.87917 4.32271 4.38451 4.60884 4.80387 4.88375 4.91983 5.04238 5.12023 5.20723 5.20979 5.39485 5.53569 5.60335 5.68011 5.86064 5.94899 5.99398 6.01121 6.02094 6.04941 6.11551 6.27230 6.48161 6.85393 7.21868 7.24135 7.63254 8.22762 8.40288 8.89190 9.46889 10.99895 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.005592 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.947164 B = 5006.370862 C = 5661.935110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.082 3.918 11 O -0.358 6.358 12 C 0.461 3.539 13 O -0.507 6.507 14 C -0.020 4.020 15 C -0.136 4.136 16 C -0.178 4.178 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.173 4.173 20 C -0.168 4.168 21 H 0.266 0.734 22 H 0.027 0.973 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.139 -6.658 -0.298 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C 0.009 3.991 11 O -0.274 6.274 12 C 0.303 3.697 13 O -0.395 6.395 14 C -0.039 4.039 15 C -0.154 4.154 16 C -0.215 4.215 17 C -0.196 4.196 18 C -0.169 4.169 19 C -0.210 4.210 20 C -0.205 4.205 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.722 -6.817 -0.294 20.869 hybrid contribution 0.106 0.758 -0.078 0.770 sum 19.828 -6.059 -0.372 20.736 Atomic orbital electron populations 1.69896 1.06295 1.27186 1.50190 1.24936 0.94753 0.99163 0.94149 0.86753 0.80422 0.83304 0.78734 1.20050 1.21191 1.18775 1.20858 0.88369 0.95005 1.52272 0.90705 1.19606 0.96951 0.90248 0.97759 1.23341 0.72726 1.01406 1.01598 1.86492 1.25873 1.32231 1.82836 1.23412 0.91303 0.82135 0.72858 1.90633 1.67113 1.36622 1.45152 1.20186 0.88378 0.95742 0.99557 1.21932 1.04415 0.93151 0.95896 1.23090 0.92936 1.03665 1.01822 1.22852 0.96134 1.00305 1.00294 1.22063 1.04628 0.92252 0.97969 1.23045 0.92389 1.02859 1.02704 1.23155 0.97790 0.95731 1.03819 0.92449 0.95504 0.95837 0.91870 0.91927 0.87783 0.87250 0.88644 0.88808 0.88877 0.88601 0.87274 0.88734 0.88782 0.88595 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.88 16 9 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 10 C 0.08 1.77 5.41 37.16 0.20 1.97 16 11 O -0.36 -6.71 8.16 -39.26 -0.32 -7.03 16 12 C 0.46 7.80 7.11 36.01 0.26 8.06 16 13 O -0.51 -9.85 14.84 -18.75 -0.28 -10.13 16 14 C -0.02 -0.24 2.62 -91.77 -0.24 -0.48 16 15 C -0.14 -1.53 4.72 -90.62 -0.43 -1.96 16 16 C -0.18 -1.62 10.18 -26.69 -0.27 -1.89 16 17 C -0.16 -1.81 8.98 -26.70 -0.24 -2.05 16 18 C -0.15 -1.70 5.13 -90.62 -0.47 -2.16 16 19 C -0.17 -1.64 10.18 -26.69 -0.27 -1.91 16 20 C -0.17 -2.01 9.45 -26.69 -0.25 -2.26 16 21 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 22 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 23 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 24 H 0.06 1.39 8.13 -51.93 -0.42 0.96 16 25 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 26 H 0.10 1.17 7.66 -51.93 -0.40 0.78 16 27 H 0.11 1.19 8.02 -51.93 -0.42 0.78 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 30 H 0.09 1.17 8.10 -51.92 -0.42 0.75 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 1.16 8.02 -51.93 -0.42 0.74 16 33 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.11 1.54 6.85 -51.93 -0.36 1.18 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -31.03 303.17 -7.92 -38.95 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.73 Total: -0.02 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.27 Total: -16.39 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.60 Total: -17.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.03 -7.92 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178765876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.105 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds