Wall clock time and date at job start Sun Mar 29 2020 22:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48500 * 109.47135 * 239.99828 * 3 2 1 5 5 H 1.48500 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47140 * 120.00142 * 3 2 1 7 7 C 1.37884 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46899 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.34798 * 117.00278 * 180.02562 * 11 10 9 13 13 O 1.21540 * 119.99550 * 359.97438 * 12 11 10 14 14 C 1.46945 * 120.00028 * 179.97438 * 12 11 10 15 15 C 1.31656 * 119.85178 * 179.97438 * 14 12 11 16 16 C 1.51416 * 120.28501 * 180.02562 * 15 14 12 17 17 C 1.53036 * 108.57329 * 71.57377 * 16 15 14 18 18 C 1.51775 * 110.81049 * 274.28725 * 17 16 15 19 19 C 1.51780 * 113.85169 * 66.95817 * 18 17 16 20 20 C 1.51405 * 119.85646 * 359.97438 * 14 12 11 21 21 H 0.96997 * 119.99927 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47032 * 60.00319 * 9 7 2 23 23 H 1.08998 * 109.47425 * 300.00087 * 9 7 2 24 24 H 1.08998 * 109.47058 * 60.00098 * 10 9 7 25 25 H 1.08998 * 109.47268 * 300.00323 * 10 9 7 26 26 H 1.07992 * 119.85744 * 0.27065 * 15 14 12 27 27 H 1.09006 * 109.61689 * 191.29554 * 16 15 14 28 28 H 1.08991 * 109.61965 * 311.66046 * 16 15 14 29 29 H 1.08997 * 109.21115 * 34.62698 * 17 16 15 30 30 H 1.08994 * 109.20847 * 153.98993 * 17 16 15 31 31 H 1.08997 * 108.61050 * 188.09218 * 18 17 16 32 32 H 1.09001 * 108.60667 * 305.97633 * 18 17 16 33 33 H 1.08999 * 109.21226 * 53.38805 * 19 18 17 34 34 H 1.09001 * 109.20571 * 172.74343 * 19 18 17 35 35 H 1.08999 * 109.62310 * 348.69626 * 20 14 12 36 36 H 1.09003 * 109.62267 * 228.15269 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2533 -6.0502 0.0024 13 8 3.4671 -5.9865 0.0018 14 6 1.5862 -7.3594 0.0035 15 6 2.3060 -8.4618 0.0033 16 6 1.6288 -9.8160 0.0039 17 6 1.0001 -10.0472 -1.3721 18 6 -0.3864 -9.4335 -1.4414 19 6 -0.3906 -7.9173 -1.3718 20 6 0.0740 -7.4348 0.0047 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6247 -2.5564 0.8919 24 1 2.8726 -3.6040 0.8909 25 1 2.8712 -3.6048 -0.8890 26 1 3.3842 -8.3998 0.0068 27 1 2.3658 -10.5937 0.2048 28 1 0.8551 -9.8380 0.7712 29 1 1.6316 -9.5934 -2.1358 30 1 0.9269 -11.1187 -1.5575 31 1 -0.8562 -9.7401 -2.3759 32 1 -0.9793 -9.8193 -0.6121 33 1 0.2787 -7.5213 -2.1355 34 1 -1.4011 -7.5527 -1.5566 35 1 -0.3416 -6.4475 0.2059 36 1 -0.2569 -8.1369 0.7701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187721334.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:45 Heat of formation + Delta-G solvation = -105.191347 kcal Electronic energy + Delta-G solvation = -16668.067456 eV Core-core repulsion = 13923.303486 eV Total energy + Delta-G solvation = -2744.763970 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07723 -38.28385 -36.02302 -33.34284 -32.72045 -32.06787 -30.19088 -26.09096 -25.19151 -24.22992 -21.90290 -20.77728 -20.49278 -18.19649 -17.21470 -16.58547 -16.03019 -15.81279 -15.01770 -14.78018 -14.46477 -13.78639 -13.62687 -13.25168 -13.08341 -12.72601 -12.34567 -12.05361 -11.77922 -11.27490 -11.19201 -11.04900 -10.89416 -10.80831 -10.71292 -10.66897 -10.51917 -10.11813 -9.61467 -9.58304 -9.29547 -9.13547 -8.42580 -6.08944 -4.13250 1.31954 3.24727 3.26540 3.31145 3.35073 3.40014 4.39834 4.53615 4.67844 4.70025 4.90679 4.98714 5.14604 5.25143 5.27497 5.36485 5.47708 5.63093 5.68242 5.72837 5.91984 5.98934 6.01984 6.10392 6.12469 6.16753 6.28470 6.38309 6.57372 6.67519 7.01973 7.57689 7.64553 7.88532 8.21972 8.30346 8.92022 9.50941 11.02557 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.004371 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.446135 B = 6404.501355 C = 6815.300625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.350 6.350 12 C 0.493 3.507 13 O -0.523 6.523 14 C -0.147 4.147 15 C -0.076 4.076 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.081 4.081 21 H 0.264 0.736 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -19.775 -1.285 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.266 6.266 12 C 0.339 3.661 13 O -0.415 6.415 14 C -0.149 4.149 15 C -0.094 4.094 16 C -0.131 4.131 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.119 4.119 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.741 -19.570 -1.295 19.627 hybrid contribution 0.706 1.099 0.005 1.306 sum -0.035 -18.471 -1.289 18.516 Atomic orbital electron populations 1.69964 1.06084 1.27071 1.49742 1.24977 0.94913 0.99348 0.94857 0.86531 0.79487 0.82488 0.78784 1.20074 1.21112 1.20067 1.20954 0.93149 0.90170 1.52269 0.92329 1.19156 0.94165 0.88997 0.98844 1.23636 0.96397 0.78872 1.00868 1.86603 1.41831 1.15616 1.82581 1.21369 0.85680 0.86128 0.72963 1.90799 1.15305 1.88538 1.46887 1.20665 0.97025 0.90120 1.07041 1.23404 1.00436 0.93562 0.92044 1.20944 0.99980 0.93806 0.98330 1.21268 0.96744 1.00619 0.96565 1.21169 0.96731 0.95844 1.01983 1.21295 1.01834 0.95081 0.97074 1.20779 0.90110 1.03395 0.97576 0.92670 0.95359 0.95359 0.92380 0.92398 0.85644 0.90694 0.90093 0.91631 0.91495 0.92200 0.92143 0.91748 0.91182 0.89388 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.07 1.73 5.42 37.16 0.20 1.93 16 11 O -0.35 -7.34 9.24 -40.76 -0.38 -7.72 16 12 C 0.49 9.30 7.87 34.26 0.27 9.57 16 13 O -0.52 -11.05 15.97 -19.30 -0.31 -11.36 16 14 C -0.15 -2.10 5.10 -102.62 -0.52 -2.62 16 15 C -0.08 -0.90 8.92 -35.83 -0.32 -1.22 16 16 C -0.09 -0.78 5.61 -27.51 -0.15 -0.94 16 17 C -0.11 -0.91 5.66 -27.33 -0.15 -1.07 16 18 C -0.12 -0.99 5.27 -27.97 -0.15 -1.14 16 19 C -0.12 -1.22 5.66 -27.31 -0.15 -1.37 16 20 C -0.08 -0.99 5.42 -27.49 -0.15 -1.14 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.13 1.56 7.44 -52.49 -0.39 1.17 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.63 6.76 -51.93 -0.35 0.28 16 29 H 0.06 0.58 7.85 -51.93 -0.41 0.18 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 33 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.22 7.26 -51.93 -0.38 0.85 16 36 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -31.24 297.19 -7.80 -39.04 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.62 Total: -4.02 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.69 Total: -11.17 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.68 Total: -19.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.24 -7.80 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187721334.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.148 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds