Wall clock time and date at job start Sun Mar 29 2020 22:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48500 * 109.47135 * 239.99828 * 3 2 1 5 5 H 1.48500 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47140 * 120.00142 * 3 2 1 7 7 C 1.37884 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46899 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.34798 * 117.00278 * 180.02562 * 11 10 9 13 13 O 1.21540 * 119.99550 * 359.97438 * 12 11 10 14 14 C 1.46945 * 120.00028 * 179.97438 * 12 11 10 15 15 C 1.31656 * 119.85178 * 179.97438 * 14 12 11 16 16 C 1.51416 * 120.28501 * 180.02562 * 15 14 12 17 17 C 1.53036 * 108.57329 * 71.57377 * 16 15 14 18 18 C 1.51775 * 110.81049 * 274.28725 * 17 16 15 19 19 C 1.51780 * 113.85169 * 66.95817 * 18 17 16 20 20 C 1.51405 * 119.85646 * 359.97438 * 14 12 11 21 21 H 0.96997 * 119.99927 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47032 * 60.00319 * 9 7 2 23 23 H 1.08998 * 109.47425 * 300.00087 * 9 7 2 24 24 H 1.08998 * 109.47058 * 60.00098 * 10 9 7 25 25 H 1.08998 * 109.47268 * 300.00323 * 10 9 7 26 26 H 1.07992 * 119.85744 * 0.27065 * 15 14 12 27 27 H 1.09006 * 109.61689 * 191.29554 * 16 15 14 28 28 H 1.08991 * 109.61965 * 311.66046 * 16 15 14 29 29 H 1.08997 * 109.21115 * 34.62698 * 17 16 15 30 30 H 1.08994 * 109.20847 * 153.98993 * 17 16 15 31 31 H 1.08997 * 108.61050 * 188.09218 * 18 17 16 32 32 H 1.09001 * 108.60667 * 305.97633 * 18 17 16 33 33 H 1.08999 * 109.21226 * 53.38805 * 19 18 17 34 34 H 1.09001 * 109.20571 * 172.74343 * 19 18 17 35 35 H 1.08999 * 109.62310 * 348.69626 * 20 14 12 36 36 H 1.09003 * 109.62267 * 228.15269 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2533 -6.0502 0.0024 13 8 3.4671 -5.9865 0.0018 14 6 1.5862 -7.3594 0.0035 15 6 2.3060 -8.4618 0.0033 16 6 1.6288 -9.8160 0.0039 17 6 1.0001 -10.0472 -1.3721 18 6 -0.3864 -9.4335 -1.4414 19 6 -0.3906 -7.9173 -1.3718 20 6 0.0740 -7.4348 0.0047 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6247 -2.5564 0.8919 24 1 2.8726 -3.6040 0.8909 25 1 2.8712 -3.6048 -0.8890 26 1 3.3842 -8.3998 0.0068 27 1 2.3658 -10.5937 0.2048 28 1 0.8551 -9.8380 0.7712 29 1 1.6316 -9.5934 -2.1358 30 1 0.9269 -11.1187 -1.5575 31 1 -0.8562 -9.7401 -2.3759 32 1 -0.9793 -9.8193 -0.6121 33 1 0.2787 -7.5213 -2.1355 34 1 -1.4011 -7.5527 -1.5566 35 1 -0.3416 -6.4475 0.2059 36 1 -0.2569 -8.1369 0.7701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187721334.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:45 Heat of formation + Delta-G solvation = -122.049734 kcal Electronic energy + Delta-G solvation = -16668.798491 eV Core-core repulsion = 13923.303486 eV Total energy + Delta-G solvation = -2745.495004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55486 -39.29426 -37.67360 -35.47347 -33.69313 -32.93664 -32.20942 -27.53960 -26.56780 -25.39470 -23.40345 -22.58005 -21.24842 -19.54758 -18.68210 -18.15450 -17.78213 -17.50761 -16.55883 -15.89343 -15.60652 -15.17666 -14.70369 -14.48325 -14.38995 -14.07304 -13.91671 -13.18880 -13.09393 -12.93480 -12.69000 -12.60586 -12.56910 -12.23799 -11.78446 -11.62281 -11.52905 -11.51628 -11.51353 -11.34417 -11.22274 -10.62968 -10.12215 -8.28696 -6.42621 0.12223 1.39622 1.43727 1.51555 1.77108 1.89353 2.39255 3.05371 3.60359 3.69966 3.97707 4.05604 4.14239 4.16557 4.19904 4.22856 4.45460 4.56943 4.63714 4.80059 4.81571 4.84254 4.98692 5.17583 5.24831 5.27574 5.28894 5.37470 5.42461 5.44571 5.48662 5.54956 5.61134 5.71103 6.03974 6.67082 6.71653 7.27169 8.83831 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049159 B = 0.004371 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.446135 B = 6404.501355 C = 6815.300625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.359 6.359 12 C 0.487 3.513 13 O -0.553 6.553 14 C -0.177 4.177 15 C -0.043 4.043 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.076 4.076 21 H 0.269 0.731 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 -21.443 -1.183 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.017 3.983 11 O -0.275 6.275 12 C 0.336 3.664 13 O -0.447 6.447 14 C -0.178 4.178 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.113 4.113 21 H 0.078 0.922 22 H 0.024 0.976 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.438 -21.263 -1.194 21.301 hybrid contribution 0.618 1.502 -0.033 1.624 sum 0.180 -19.762 -1.227 19.801 Atomic orbital electron populations 1.70088 1.07830 1.28418 1.50134 1.25974 0.95862 1.03415 0.93904 0.85356 0.78199 0.77313 0.79319 1.19068 1.20262 1.19032 1.21342 0.93677 0.91252 1.52926 0.91774 1.18959 0.94243 0.90525 0.96651 1.23169 0.95173 0.79254 1.00754 1.86603 1.42032 1.15684 1.83186 1.22302 0.85617 0.86768 0.71742 1.90770 1.16456 1.88810 1.48627 1.20666 0.98206 0.88014 1.10923 1.23796 1.00192 0.94743 0.87439 1.21110 1.00845 0.91641 0.99167 1.21285 0.96047 1.02099 0.95614 1.21160 0.97441 0.93611 1.03281 1.21308 1.01330 0.97205 0.95444 1.20771 0.88493 1.02719 0.99290 0.92248 0.97563 0.97501 0.92376 0.92483 0.86419 0.88257 0.88524 0.92976 0.88838 0.91201 0.90473 0.93822 0.90902 0.92098 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 8 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.87 5.35 29.85 0.16 2.03 16 10 C 0.09 4.32 5.42 71.98 0.39 4.71 16 11 O -0.36 -15.73 9.24 -57.09 -0.53 -16.26 16 12 C 0.49 18.94 7.87 70.10 0.55 19.49 16 13 O -0.55 -23.92 15.97 19.71 0.31 -23.61 16 14 C -0.18 -4.98 5.10 -18.01 -0.09 -5.08 16 15 C -0.04 -0.95 8.92 25.26 0.23 -0.72 16 16 C -0.09 -1.18 5.61 30.09 0.17 -1.01 16 17 C -0.11 -1.40 5.66 30.20 0.17 -1.23 16 18 C -0.12 -1.59 5.27 29.79 0.16 -1.43 16 19 C -0.12 -2.33 5.66 30.22 0.17 -2.16 16 20 C -0.08 -1.79 5.42 30.10 0.16 -1.62 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 23 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.12 2.79 7.44 -2.91 -0.02 2.77 16 27 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.10 1.06 6.76 -2.39 -0.02 1.05 16 29 H 0.05 0.81 7.85 -2.39 -0.02 0.79 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.83 7.87 -2.39 -0.02 0.81 16 33 H 0.04 1.04 7.85 -2.39 -0.02 1.03 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.75 7.26 -2.39 -0.02 1.74 16 36 H 0.10 1.82 6.75 -2.39 -0.02 1.81 16 Total: -1.00 -68.96 297.19 5.91 -63.05 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.04 Total: 4.70 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 2.76 Total: -18.22 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.21 Total: -39.87 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.96 5.91 -63.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187721334.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.999 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds