Wall clock time and date at job start Sun Mar 29 2020 22:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47003 * 179.97438 * 10 9 7 12 12 C 1.34222 * 117.00094 * 180.02562 * 11 10 9 13 13 O 1.20821 * 120.00135 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99985 * 179.97438 * 12 11 10 15 15 C 1.53005 * 109.47035 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.35664 * 305.27779 * 15 14 12 17 17 C 1.50068 * 109.35589 * 65.00448 * 15 14 12 18 18 C 1.29444 * 124.07742 * 137.36001 * 17 15 14 19 19 C 1.50065 * 124.07411 * 359.50478 * 18 17 15 20 20 C 1.53025 * 110.14786 * 17.13101 * 19 18 17 21 21 C 1.53028 * 109.35735 * 185.68796 * 15 14 12 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.08994 * 109.47313 * 299.99702 * 14 12 11 28 28 H 1.09006 * 109.46774 * 60.00058 * 14 12 11 29 29 H 1.08000 * 117.96087 * 317.33643 * 17 15 14 30 30 H 1.07996 * 117.95935 * 179.53075 * 18 17 15 31 31 H 1.08997 * 109.35832 * 137.33778 * 19 18 17 32 32 H 1.08996 * 109.36068 * 256.92519 * 19 18 17 33 33 H 1.09002 * 109.63997 * 70.24617 * 20 19 18 34 34 H 1.08995 * 109.64187 * 190.66077 * 20 19 18 35 35 H 1.08997 * 109.64512 * 310.04863 * 21 15 14 36 36 H 1.09010 * 109.63729 * 70.67327 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5195 -4.9196 0.0011 12 6 2.2506 -6.0452 0.0018 13 8 3.4571 -5.9820 0.0013 14 6 1.5664 -7.3880 0.0030 15 6 2.6202 -8.4973 0.0029 16 1 3.2990 -8.3506 -0.8373 17 6 3.3975 -8.4451 1.2855 18 6 3.7284 -9.4888 1.9760 19 6 3.3718 -10.8961 1.5959 20 6 2.9622 -10.9565 0.1228 21 6 1.9279 -9.8546 -0.1390 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 0.9440 -7.4778 0.8932 28 1 0.9433 -7.4791 -0.8868 29 1 3.6999 -7.4765 1.6553 30 1 4.2960 -9.3373 2.8822 31 1 4.2336 -11.5435 1.7581 32 1 2.5433 -11.2388 2.2156 33 1 3.8367 -10.7950 -0.5076 34 1 2.5273 -11.9315 -0.0969 35 1 1.1190 -9.9311 0.5876 36 1 1.5290 -9.9587 -1.1481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187833842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:09 Heat of formation + Delta-G solvation = -104.902551 kcal Electronic energy + Delta-G solvation = -16394.628537 eV Core-core repulsion = 13649.877091 eV Total energy + Delta-G solvation = -2744.751447 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18450 -38.54362 -36.05871 -33.35064 -32.83014 -31.11907 -30.30146 -27.67971 -24.94977 -22.79774 -22.32788 -20.97921 -20.18624 -18.07952 -17.31001 -16.29381 -16.02393 -15.95722 -15.71968 -14.51179 -14.40723 -14.18656 -13.45942 -13.05489 -12.84014 -12.67950 -12.41090 -12.27357 -12.15704 -11.65625 -11.19025 -11.05136 -11.02620 -10.75807 -10.69279 -10.66390 -10.31010 -10.02670 -9.62087 -9.56016 -9.30010 -9.04074 -8.43800 -6.10045 -4.14542 2.28034 2.63062 3.23391 3.30249 3.34294 3.38930 4.39101 4.53964 4.55837 4.68596 4.98686 5.02347 5.19838 5.26316 5.31449 5.37472 5.42491 5.55444 5.58177 5.65690 5.73006 5.77249 5.91998 6.10709 6.11927 6.17056 6.21809 6.65291 6.65980 6.92245 7.06056 7.56769 7.63094 7.87494 8.21186 8.30287 8.90882 9.49791 11.01471 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.067846 B = 0.003716 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.603199 B = 7533.843165 C = 7733.440645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.359 6.359 12 C 0.453 3.547 13 O -0.517 6.517 14 C -0.109 4.109 15 C -0.048 4.048 16 H 0.089 0.911 17 C -0.136 4.136 18 C -0.169 4.169 19 C -0.089 4.089 20 C -0.120 4.120 21 C -0.115 4.115 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -20.658 1.024 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.276 6.276 12 C 0.296 3.704 13 O -0.407 6.407 14 C -0.147 4.147 15 C -0.066 4.066 16 H 0.107 0.893 17 C -0.154 4.154 18 C -0.187 4.187 19 C -0.126 4.126 20 C -0.157 4.157 21 C -0.153 4.153 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.205 -20.457 1.029 20.732 hybrid contribution 0.640 1.146 0.087 1.315 sum 3.844 -19.311 1.116 19.722 Atomic orbital electron populations 1.69965 1.06093 1.27100 1.49730 1.24984 0.94923 0.99382 0.94857 0.86526 0.79479 0.82464 0.78789 1.20063 1.21111 1.20062 1.20954 0.93144 0.90187 1.52280 0.92329 1.19163 0.94191 0.89076 0.98831 1.23610 0.96329 0.78967 1.00834 1.86527 1.42539 1.15919 1.82571 1.23586 0.86678 0.87407 0.72679 1.90616 1.15843 1.88331 1.45909 1.21422 0.99079 0.88403 1.05753 1.19924 0.95688 0.93289 0.97683 0.89269 1.22207 0.98299 0.99086 0.95816 1.22005 1.02059 0.94361 1.00324 1.20434 1.01002 0.94859 0.96345 1.21587 0.99219 0.98446 0.96478 1.21658 0.98100 0.93507 1.02011 0.92650 0.95384 0.95386 0.92389 0.92434 0.87827 0.87654 0.87151 0.88143 0.91444 0.91144 0.91712 0.91668 0.91336 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.70 5.40 37.16 0.20 1.90 16 11 O -0.36 -7.26 10.22 -39.24 -0.40 -7.66 16 12 C 0.45 7.82 7.59 36.01 0.27 8.09 16 13 O -0.52 -10.07 14.04 -18.75 -0.26 -10.33 16 14 C -0.11 -1.31 5.25 -27.88 -0.15 -1.46 16 15 C -0.05 -0.54 2.11 -92.06 -0.19 -0.73 16 16 H 0.09 1.10 7.94 -51.93 -0.41 0.69 16 17 C -0.14 -1.70 8.42 -35.90 -0.30 -2.00 16 18 C -0.17 -1.81 9.80 -35.90 -0.35 -2.16 16 19 C -0.09 -0.76 6.12 -28.18 -0.17 -0.93 16 20 C -0.12 -0.97 6.01 -26.52 -0.16 -1.13 16 21 C -0.12 -0.99 5.30 -26.52 -0.14 -1.13 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 26 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.63 6.54 -52.49 -0.34 1.29 16 30 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -31.02 300.54 -7.76 -38.78 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.79 Total: -3.29 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.55 Total: -12.73 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.66 Total: -17.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.02 -7.76 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187833842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.118 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds