Wall clock time and date at job start Sun Mar 29 2020 22:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.50693 * 109.47262 * 239.99738 * 2 1 3 5 5 H 1.08007 * 120.00111 * 354.93141 * 4 2 1 6 6 C 1.37881 * 120.00055 * 174.92393 * 4 2 1 7 7 N 1.31514 * 119.99710 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00055 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47256 * 84.86486 * 8 6 4 10 10 H 1.48503 * 109.47334 * 204.86842 * 8 6 4 11 11 H 1.48503 * 109.47079 * 324.87013 * 8 6 4 12 12 N 1.46901 * 109.46987 * 119.99966 * 2 1 3 13 13 C 1.46892 * 111.00096 * 58.95423 * 12 2 1 14 14 C 1.46901 * 110.99887 * 294.99844 * 12 2 1 15 15 C 1.50700 * 109.47200 * 190.00276 * 14 12 2 16 16 C 1.38749 * 120.38949 * 90.00328 * 15 14 12 17 17 C 1.38501 * 118.45297 * 180.30151 * 16 15 14 18 18 C 1.38562 * 119.13383 * 359.44988 * 17 16 15 19 19 F 1.35103 * 119.64886 * 180.27767 * 18 17 16 20 20 N 1.32026 * 120.70466 * 0.55909 * 18 17 16 21 21 C 1.31937 * 121.68407 * 359.72236 * 20 18 17 22 22 H 1.09000 * 109.47094 * 295.10784 * 1 2 3 23 23 H 1.08993 * 109.46962 * 55.11496 * 1 2 3 24 24 H 1.09000 * 109.46841 * 175.10980 * 1 2 3 25 25 H 0.97001 * 119.99798 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47343 * 296.04390 * 13 12 2 27 27 H 1.08998 * 109.47330 * 56.05115 * 13 12 2 28 28 H 1.09005 * 109.46850 * 176.04291 * 13 12 2 29 29 H 1.09000 * 109.47024 * 70.00158 * 14 12 2 30 30 H 1.09002 * 109.47242 * 310.00663 * 14 12 2 31 31 H 1.08005 * 120.77044 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.43176 * 179.72512 * 17 16 15 33 33 H 1.08002 * 119.60387 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.3341 -1.1919 -1.8989 6 6 3.3836 -0.7457 -1.5027 7 7 3.8219 -1.3653 -2.5768 8 14 4.5915 0.0865 -0.3462 9 1 4.9328 -0.8396 0.7633 10 1 5.8257 0.4422 -1.0916 11 1 3.9763 1.3187 0.2092 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.3680 -0.5570 3.6006 16 6 3.6157 -0.0805 3.9764 17 6 4.2434 -0.6619 5.0656 18 6 3.6034 -1.6854 5.7459 19 9 4.2037 -2.2561 6.8132 20 7 2.4156 -2.1126 5.3590 21 6 1.7930 -1.5844 4.3226 22 1 -0.3633 0.4361 0.9306 23 1 -0.3633 0.5877 -0.8429 24 1 -0.3633 -1.0239 -0.0876 25 1 4.7725 -1.3904 -2.7682 26 1 0.4420 -2.0730 1.3348 27 1 1.8169 -2.5950 0.3319 28 1 1.9619 -2.5868 2.1059 29 1 0.5723 -0.0345 2.5726 30 1 1.9297 1.0871 2.3124 31 1 4.0884 0.7220 3.4296 32 1 5.2170 -0.3190 5.3831 33 1 0.8218 -1.9596 4.0356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189329312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:57 Heat of formation + Delta-G solvation = 1.110975 kcal Electronic energy + Delta-G solvation = -17050.755514 eV Core-core repulsion = 14219.433605 eV Total energy + Delta-G solvation = -2831.321909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.95598 -40.14932 -37.40614 -33.24067 -32.34669 -31.41762 -29.21141 -26.85463 -25.59368 -23.97243 -23.74334 -21.52536 -19.20577 -18.01740 -17.20662 -16.85201 -16.04164 -15.53093 -15.10523 -14.49267 -14.18796 -14.00923 -13.52504 -13.35266 -13.04295 -12.87351 -12.72823 -12.34970 -11.70615 -11.45815 -11.14204 -11.05732 -10.69691 -10.48357 -10.04936 -9.88898 -9.69709 -9.62962 -9.20661 -8.76342 -8.58353 -7.36767 -6.07955 -4.14645 0.94397 1.17883 3.44353 3.49378 3.58318 3.58611 3.64894 4.52650 4.54671 4.74545 4.87230 4.92748 5.01830 5.36711 5.47813 5.69691 5.74119 5.90045 5.95753 6.06099 6.18110 6.20419 6.26893 6.33333 6.46143 6.65204 6.73322 6.93825 7.14100 7.57402 7.65260 7.91426 8.11187 8.51535 8.92734 9.56236 11.01988 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.007860 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.722973 B = 3561.659831 C = 4046.992941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.512 4.512 5 H 0.072 0.928 6 C 0.082 3.918 7 N -0.898 5.898 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.312 1.312 11 H -0.273 1.273 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.085 3.915 15 C -0.121 4.121 16 C -0.034 4.034 17 C -0.192 4.192 18 C 0.291 3.709 19 F -0.119 7.119 20 N -0.515 5.515 21 C 0.138 3.862 22 H 0.030 0.970 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.264 0.736 26 H 0.016 0.984 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 3.221 13.523 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.063 0.937 4 C -0.550 4.550 5 H 0.090 0.910 6 C -0.122 4.122 7 N -0.535 5.535 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.241 1.241 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.114 4.114 14 C -0.043 4.043 15 C -0.124 4.124 16 C -0.060 4.060 17 C -0.213 4.213 18 C 0.137 3.863 19 F -0.099 7.099 20 N -0.229 5.229 21 C -0.019 4.019 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.717 2.464 13.889 14.210 hybrid contribution 0.434 0.811 0.335 0.979 sum -1.283 3.275 14.224 14.652 Atomic orbital electron populations 1.22291 0.99789 1.00967 0.99304 1.19913 0.89958 0.95390 0.88206 0.93685 1.20861 0.93077 1.36081 1.04973 0.90999 1.25034 0.98695 0.94017 0.94442 1.69948 1.14881 1.42497 1.26142 0.86198 0.78470 0.80211 0.80488 1.19712 1.24059 1.19868 1.62799 1.59627 1.02585 1.00766 1.22204 0.96145 0.90630 1.02406 1.21051 0.96401 0.98237 0.88658 1.21070 0.96029 0.97513 0.97780 1.21430 0.93237 0.98035 0.93322 1.21798 1.02532 0.98565 0.98453 1.18117 0.89841 0.92129 0.86197 1.91592 1.81321 1.84099 1.52842 1.66980 1.08812 1.30073 1.17013 1.22411 0.99018 0.91775 0.88657 0.95122 0.93006 0.93145 0.92683 0.96534 0.89595 0.93965 0.93766 0.90315 0.83850 0.83763 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.40 37.16 0.31 -2.72 16 2 C 0.17 3.67 1.70 -68.86 -0.12 3.56 16 3 H 0.05 1.01 6.80 -51.93 -0.35 0.65 16 4 C -0.51 -13.53 7.76 -34.44 -0.27 -13.80 16 5 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 7 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 8 Si 0.92 22.28 26.26 -169.99 -4.46 17.81 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.31 -7.76 7.11 56.52 0.40 -7.35 16 11 H -0.27 -6.27 6.52 56.52 0.37 -5.90 16 12 N -0.53 -10.48 2.78 -237.73 -0.66 -11.15 16 13 C 0.03 0.64 8.40 60.06 0.50 1.15 16 14 C 0.08 1.33 4.59 -4.98 -0.02 1.31 16 15 C -0.12 -1.80 4.89 -104.48 -0.51 -2.31 16 16 C -0.03 -0.48 9.86 -39.30 -0.39 -0.87 16 17 C -0.19 -2.54 10.09 -39.37 -0.40 -2.94 16 18 C 0.29 4.34 8.41 -17.35 -0.15 4.19 16 19 F -0.12 -1.74 17.29 2.25 0.04 -1.70 16 20 N -0.51 -8.12 10.37 -13.59 -0.14 -8.26 16 21 C 0.14 2.00 9.14 -17.56 -0.16 1.84 16 22 H 0.03 0.48 6.52 -51.93 -0.34 0.14 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.94 6.75 -51.93 -0.35 0.59 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.28 6.62 -51.93 -0.34 -0.07 16 27 H 0.09 1.88 6.99 -51.93 -0.36 1.52 16 28 H 0.04 0.74 6.17 -51.93 -0.32 0.42 16 29 H 0.04 0.63 6.78 -51.93 -0.35 0.28 16 30 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 31 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.16 2.02 8.04 -52.49 -0.42 1.60 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -29.60 273.27 -5.74 -35.34 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.11 Total: -1.75 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.29 Total: -8.40 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.03 Total: -45.42 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.46 Total: 17.81 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.60 -5.74 -35.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189329312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.447 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds