Wall clock time and date at job start Sun Mar 29 2020 22:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.50693 * 109.47262 * 239.99738 * 2 1 3 5 5 H 1.08007 * 120.00111 * 354.93141 * 4 2 1 6 6 C 1.37881 * 120.00055 * 174.92393 * 4 2 1 7 7 N 1.31514 * 119.99710 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00055 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47256 * 84.86486 * 8 6 4 10 10 H 1.48503 * 109.47334 * 204.86842 * 8 6 4 11 11 H 1.48503 * 109.47079 * 324.87013 * 8 6 4 12 12 N 1.46901 * 109.46987 * 119.99966 * 2 1 3 13 13 C 1.46892 * 111.00096 * 58.95423 * 12 2 1 14 14 C 1.46901 * 110.99887 * 294.99844 * 12 2 1 15 15 C 1.50700 * 109.47200 * 190.00276 * 14 12 2 16 16 C 1.38749 * 120.38949 * 90.00328 * 15 14 12 17 17 C 1.38501 * 118.45297 * 180.30151 * 16 15 14 18 18 C 1.38562 * 119.13383 * 359.44988 * 17 16 15 19 19 F 1.35103 * 119.64886 * 180.27767 * 18 17 16 20 20 N 1.32026 * 120.70466 * 0.55909 * 18 17 16 21 21 C 1.31937 * 121.68407 * 359.72236 * 20 18 17 22 22 H 1.09000 * 109.47094 * 295.10784 * 1 2 3 23 23 H 1.08993 * 109.46962 * 55.11496 * 1 2 3 24 24 H 1.09000 * 109.46841 * 175.10980 * 1 2 3 25 25 H 0.97001 * 119.99798 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47343 * 296.04390 * 13 12 2 27 27 H 1.08998 * 109.47330 * 56.05115 * 13 12 2 28 28 H 1.09005 * 109.46850 * 176.04291 * 13 12 2 29 29 H 1.09000 * 109.47024 * 70.00158 * 14 12 2 30 30 H 1.09002 * 109.47242 * 310.00663 * 14 12 2 31 31 H 1.08005 * 120.77044 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.43176 * 179.72512 * 17 16 15 33 33 H 1.08002 * 119.60387 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.3341 -1.1919 -1.8989 6 6 3.3836 -0.7457 -1.5027 7 7 3.8219 -1.3653 -2.5768 8 14 4.5915 0.0865 -0.3462 9 1 4.9328 -0.8396 0.7633 10 1 5.8257 0.4422 -1.0916 11 1 3.9763 1.3187 0.2092 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.3680 -0.5570 3.6006 16 6 3.6157 -0.0805 3.9764 17 6 4.2434 -0.6619 5.0656 18 6 3.6034 -1.6854 5.7459 19 9 4.2037 -2.2561 6.8132 20 7 2.4156 -2.1126 5.3590 21 6 1.7930 -1.5844 4.3226 22 1 -0.3633 0.4361 0.9306 23 1 -0.3633 0.5877 -0.8429 24 1 -0.3633 -1.0239 -0.0876 25 1 4.7725 -1.3904 -2.7682 26 1 0.4420 -2.0730 1.3348 27 1 1.8169 -2.5950 0.3319 28 1 1.9619 -2.5868 2.1059 29 1 0.5723 -0.0345 2.5726 30 1 1.9297 1.0871 2.3124 31 1 4.0884 0.7220 3.4296 32 1 5.2170 -0.3190 5.3831 33 1 0.8218 -1.9596 4.0356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189329312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:57 Heat of formation + Delta-G solvation = -18.054773 kcal Electronic energy + Delta-G solvation = -17051.586603 eV Core-core repulsion = 14219.433605 eV Total energy + Delta-G solvation = -2832.152998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.05689 -41.26165 -38.91379 -34.82263 -33.81182 -32.79712 -30.70153 -28.21088 -27.39412 -25.35232 -24.87554 -22.82100 -20.85983 -19.10391 -18.82166 -18.30514 -17.18731 -16.87784 -16.51115 -16.04894 -15.48938 -15.38319 -14.83669 -14.81253 -14.52519 -14.12963 -14.04980 -13.87731 -13.14805 -12.94466 -12.69014 -12.61006 -12.34088 -12.08679 -11.78688 -11.59988 -11.15645 -10.92401 -10.72125 -10.68439 -9.90878 -8.85942 -8.20198 -6.29777 -0.13899 0.11569 1.48606 1.58360 1.65609 2.48021 2.53870 2.57496 3.09075 3.49712 3.62963 3.78678 3.86866 3.93772 4.34887 4.50891 4.53041 4.60314 4.69910 4.72723 4.79235 4.83980 4.90024 4.92639 5.18501 5.27432 5.39729 5.51527 5.59507 5.69811 6.12392 6.47734 6.57730 6.63255 6.86356 7.44677 8.93135 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.007860 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.722973 B = 3561.659831 C = 4046.992941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 H 0.047 0.953 4 C -0.506 4.506 5 H 0.029 0.971 6 C 0.024 3.976 7 N -0.952 5.952 8 Si 0.977 3.023 9 H -0.270 1.270 10 H -0.323 1.323 11 H -0.245 1.245 12 N -0.550 5.550 13 C 0.044 3.956 14 C 0.089 3.911 15 C -0.130 4.130 16 C -0.040 4.040 17 C -0.184 4.184 18 C 0.276 3.724 19 F -0.122 7.122 20 N -0.538 5.538 21 C 0.137 3.863 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 4.725 15.918 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.065 0.935 4 C -0.545 4.545 5 H 0.048 0.952 6 C -0.174 4.174 7 N -0.592 5.592 8 Si 0.805 3.195 9 H -0.196 1.196 10 H -0.253 1.253 11 H -0.168 1.168 12 N -0.275 5.275 13 C -0.104 4.104 14 C -0.039 4.039 15 C -0.132 4.132 16 C -0.066 4.066 17 C -0.204 4.204 18 C 0.123 3.877 19 F -0.101 7.101 20 N -0.252 5.252 21 C -0.020 4.020 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.176 0.824 32 H 0.190 0.810 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.010 3.978 16.312 16.910 hybrid contribution 0.433 0.298 -0.379 0.648 sum -1.576 4.276 15.933 16.572 Atomic orbital electron populations 1.22181 0.97432 1.00904 1.01104 1.19707 0.91893 0.94496 0.87064 0.93538 1.21140 0.92205 1.34782 1.06339 0.95236 1.25878 1.00788 0.94951 0.95832 1.70102 1.14994 1.45410 1.28730 0.85219 0.75808 0.80245 0.78243 1.19556 1.25311 1.16841 1.62409 1.60369 1.02952 1.01773 1.22064 0.97487 0.90121 1.00774 1.21081 0.97905 0.98191 0.86727 1.21043 0.96526 0.97927 0.97754 1.21709 0.93037 0.98329 0.93505 1.22048 1.03385 0.97416 0.97582 1.18402 0.90020 0.92778 0.86506 1.91584 1.81318 1.84233 1.53003 1.66971 1.09555 1.30917 1.17798 1.22668 0.99578 0.91518 0.88195 0.91553 0.93316 0.93828 0.93019 0.94457 0.93745 0.92653 0.91558 0.89130 0.82396 0.80963 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 8.40 71.99 0.60 -4.79 16 2 C 0.17 7.17 1.70 44.17 0.08 7.25 16 3 H 0.05 1.93 6.80 -2.39 -0.02 1.91 16 4 C -0.51 -27.13 7.76 25.60 0.20 -26.94 16 5 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 6 C 0.02 1.35 5.47 84.66 0.46 1.81 16 7 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 8 Si 0.98 45.43 26.26 68.60 1.80 47.23 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 11 H -0.24 -10.11 6.52 99.48 0.65 -9.46 16 12 N -0.55 -20.09 2.78 -906.04 -2.52 -22.61 16 13 C 0.04 1.57 8.40 127.69 1.07 2.64 16 14 C 0.09 2.39 4.59 85.56 0.39 2.79 16 15 C -0.13 -3.37 4.89 -19.77 -0.10 -3.47 16 16 C -0.04 -0.96 9.86 22.45 0.22 -0.74 16 17 C -0.18 -4.22 10.09 22.41 0.23 -3.99 16 18 C 0.28 7.57 8.41 84.74 0.71 8.28 16 19 F -0.12 -3.34 17.29 44.97 0.78 -2.56 16 20 N -0.54 -15.71 10.37 -196.92 -2.04 -17.75 16 21 C 0.14 3.54 9.14 84.65 0.77 4.31 16 22 H 0.07 1.80 6.52 -2.39 -0.02 1.79 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.04 1.54 6.75 -2.39 -0.02 1.52 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.04 1.16 6.62 -2.38 -0.02 1.15 16 27 H 0.04 1.95 6.99 -2.39 -0.02 1.93 16 28 H 0.05 1.82 6.17 -2.38 -0.01 1.81 16 29 H 0.07 1.53 6.78 -2.39 -0.02 1.51 16 30 H 0.09 2.28 7.95 -2.39 -0.02 2.26 16 31 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.18 3.84 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -65.20 273.27 4.01 -61.20 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.05 Total: 5.92 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.64 Total: -12.85 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.26 Total: -98.93 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.80 Total: 47.23 kcal Total: -65.20 4.01 -61.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189329312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.141 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds