Wall clock time and date at job start Sun Mar 29 2020 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 H 1.09000 * 109.47043 * 54.88155 * 3 2 1 5 5 C 1.50701 * 109.46871 * 174.87315 * 3 2 1 6 6 H 1.08008 * 119.99623 * 120.00156 * 5 3 2 7 7 C 1.37878 * 120.00504 * 300.00067 * 5 3 2 8 8 N 1.31516 * 119.99428 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47244 * 89.99910 * 9 7 5 11 11 H 1.48504 * 109.46781 * 209.99887 * 9 7 5 12 12 H 1.48497 * 109.47076 * 329.99716 * 9 7 5 13 13 N 1.46890 * 109.46992 * 294.87235 * 3 2 1 14 14 C 1.46905 * 110.99882 * 153.52282 * 13 3 2 15 15 C 1.50701 * 109.47171 * 176.63102 * 14 13 3 16 16 C 1.38744 * 120.39097 * 269.97899 * 15 14 13 17 17 C 1.38505 * 118.45302 * 180.02562 * 16 15 14 18 18 C 1.38556 * 119.13626 * 0.02562 * 17 16 15 19 19 F 1.35101 * 119.64852 * 180.02562 * 18 17 16 20 20 N 1.32025 * 120.70203 * 359.97438 * 18 17 16 21 21 C 1.31941 * 121.69044 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.46901 * 186.03850 * 1 2 3 23 23 H 1.08998 * 109.47034 * 306.03736 * 1 2 3 24 24 H 1.09002 * 109.47215 * 66.03692 * 1 2 3 25 25 H 1.08997 * 109.47048 * 239.99609 * 2 1 3 26 26 H 1.09001 * 109.46961 * 120.00541 * 2 1 3 27 27 H 0.97008 * 119.99389 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99981 * 29.57829 * 13 3 2 29 29 H 1.09000 * 109.47101 * 56.63541 * 14 13 3 30 30 H 1.08993 * 109.47257 * 296.63553 * 14 13 3 31 31 H 1.08005 * 120.77240 * 0.04161 * 16 15 14 32 32 H 1.07998 * 120.43059 * 179.97438 * 17 16 15 33 33 H 1.07993 * 119.60313 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 0.8406 5 6 3.5417 1.4443 0.1270 6 1 4.1486 1.8883 -0.6483 7 6 4.1408 0.8792 1.2327 8 7 3.4017 0.3381 2.1765 9 14 6.0021 0.8821 1.3903 10 1 6.4374 2.1155 2.0934 11 1 6.4351 -0.3085 2.1653 12 1 6.6135 0.8414 0.0377 13 7 1.6541 2.0982 -1.2564 14 6 1.5408 3.5521 -1.0783 15 6 1.2254 4.1974 -2.4031 16 6 2.2487 4.6166 -3.2410 17 6 1.9132 5.2053 -4.4490 18 6 0.5757 5.3553 -4.7779 19 9 0.2367 5.9276 -5.9538 20 7 -0.3711 4.9440 -3.9548 21 6 -0.0858 4.3794 -2.7969 22 1 -0.3633 -1.0220 0.1081 23 1 -0.3633 0.6046 0.8310 24 1 -0.3634 0.4174 -0.9391 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8232 -0.0592 2.9546 28 1 0.7955 1.7104 -1.6179 29 1 2.4831 3.9459 -0.6976 30 1 0.7427 3.7701 -0.3688 31 1 3.2829 4.4867 -2.9579 32 1 2.6842 5.5437 -5.1254 33 1 -0.8871 4.0558 -2.1493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189580112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:47 Heat of formation + Delta-G solvation = -14.808903 kcal Electronic energy + Delta-G solvation = -16393.904624 eV Core-core repulsion = 13561.892377 eV Total energy + Delta-G solvation = -2832.012247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.95212 -40.02417 -36.49415 -33.51417 -32.28548 -31.60287 -29.92777 -26.78925 -24.82144 -23.83845 -22.76400 -21.46296 -19.63316 -18.00418 -17.22036 -16.32863 -15.99992 -15.47772 -14.89233 -14.58650 -14.18685 -13.98582 -13.71795 -13.09347 -13.00384 -12.76984 -12.31152 -12.23623 -11.73630 -11.40560 -11.17040 -10.86816 -10.68824 -10.02612 -9.97467 -9.80290 -9.72334 -9.52614 -9.19203 -8.74671 -8.40648 -7.36119 -6.02621 -4.07225 0.96598 1.20803 3.28020 3.35483 3.39160 3.62110 3.65833 4.39859 4.55996 4.85909 4.93978 5.01476 5.25489 5.36575 5.55836 5.76444 5.87855 5.98594 6.10212 6.11411 6.25283 6.36682 6.48257 6.68372 6.78664 7.00200 7.10216 7.39006 7.66405 7.71288 7.84163 8.17611 8.31476 8.63890 8.99987 9.58077 11.02739 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.030647 B = 0.005674 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.422684 B = 4933.572216 C = 5645.536998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.106 3.894 15 C -0.123 4.123 16 C -0.028 4.028 17 C -0.194 4.194 18 C 0.289 3.711 19 F -0.120 7.120 20 N -0.516 5.516 21 C 0.133 3.867 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.100 0.900 27 H 0.260 0.740 28 H 0.319 0.681 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 6.874 -7.897 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.024 4.024 15 C -0.126 4.126 16 C -0.054 4.054 17 C -0.215 4.215 18 C 0.136 3.864 19 F -0.100 7.100 20 N -0.230 5.230 21 C -0.024 4.024 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.136 0.864 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.210 6.936 -8.239 11.563 hybrid contribution 0.911 -0.013 0.613 1.098 sum -3.299 6.923 -7.626 10.815 Atomic orbital electron populations 1.21890 0.99541 0.99884 0.99525 1.21780 0.91270 1.00234 1.03203 1.19198 0.95573 0.90018 0.84055 0.97769 1.21186 0.91093 1.36670 1.04465 0.92046 1.24958 0.98151 0.95546 0.95827 1.69870 1.34794 1.39200 1.09636 0.86550 0.85710 0.77396 0.78044 1.20866 1.21347 1.19924 1.60770 1.36589 1.00551 1.33362 1.20764 1.01417 0.90609 0.89580 1.21206 0.93647 0.98686 0.99063 1.21499 1.00927 0.91782 0.91221 1.21829 0.95228 1.04624 0.99797 1.18142 0.89501 0.95711 0.83089 1.91590 1.93612 1.81609 1.43146 1.66967 1.37750 1.13146 1.05173 1.22426 0.95818 0.93472 0.90678 0.94296 0.93821 0.94613 0.93982 0.88144 0.93015 0.86387 0.89351 0.95024 0.83336 0.83805 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.63 37.16 0.36 -2.41 16 2 C -0.13 -2.84 5.35 -26.73 -0.14 -2.98 16 3 C 0.22 5.09 2.03 -68.87 -0.14 4.95 16 4 H 0.00 0.12 7.82 -51.93 -0.41 -0.29 16 5 C -0.50 -12.93 8.63 -34.44 -0.30 -13.23 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -24.57 11.29 55.43 0.63 -23.95 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 N -0.68 -13.23 6.27 -109.23 -0.68 -13.91 16 14 C 0.11 1.77 5.60 -4.97 -0.03 1.74 16 15 C -0.12 -1.77 5.44 -104.48 -0.57 -2.34 16 16 C -0.03 -0.37 9.86 -39.30 -0.39 -0.76 16 17 C -0.19 -2.39 10.09 -39.37 -0.40 -2.79 16 18 C 0.29 4.12 8.41 -17.35 -0.15 3.97 16 19 F -0.12 -1.69 17.29 2.25 0.04 -1.65 16 20 N -0.52 -7.83 10.37 -13.60 -0.14 -7.97 16 21 C 0.13 1.84 10.86 -17.55 -0.19 1.65 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.32 5.73 6.59 -39.29 -0.26 5.47 16 29 H 0.09 1.58 7.96 -51.93 -0.41 1.16 16 30 H 0.03 0.50 8.07 -51.93 -0.42 0.09 16 31 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -27.80 285.02 -7.15 -34.96 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.23 Total: 3.35 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.03 Total: -10.81 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.20 Total: -45.83 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.80 -7.15 -34.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189580112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.147 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds