Wall clock time and date at job start Sun Mar 29 2020 21:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 H 1.09000 * 109.47043 * 54.88155 * 3 2 1 5 5 C 1.50701 * 109.46871 * 174.87315 * 3 2 1 6 6 H 1.08008 * 119.99623 * 120.00156 * 5 3 2 7 7 C 1.37878 * 120.00504 * 300.00067 * 5 3 2 8 8 N 1.31516 * 119.99428 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47244 * 89.99910 * 9 7 5 11 11 H 1.48504 * 109.46781 * 209.99887 * 9 7 5 12 12 H 1.48497 * 109.47076 * 329.99716 * 9 7 5 13 13 N 1.46890 * 109.46992 * 294.87235 * 3 2 1 14 14 C 1.46905 * 110.99882 * 153.52282 * 13 3 2 15 15 C 1.50701 * 109.47171 * 176.63102 * 14 13 3 16 16 C 1.38744 * 120.39097 * 269.97899 * 15 14 13 17 17 C 1.38505 * 118.45302 * 180.02562 * 16 15 14 18 18 C 1.38556 * 119.13626 * 0.02562 * 17 16 15 19 19 F 1.35101 * 119.64852 * 180.02562 * 18 17 16 20 20 N 1.32025 * 120.70203 * 359.97438 * 18 17 16 21 21 C 1.31941 * 121.69044 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.46901 * 186.03850 * 1 2 3 23 23 H 1.08998 * 109.47034 * 306.03736 * 1 2 3 24 24 H 1.09002 * 109.47215 * 66.03692 * 1 2 3 25 25 H 1.08997 * 109.47048 * 239.99609 * 2 1 3 26 26 H 1.09001 * 109.46961 * 120.00541 * 2 1 3 27 27 H 0.97008 * 119.99389 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99981 * 29.57829 * 13 3 2 29 29 H 1.09000 * 109.47101 * 56.63541 * 14 13 3 30 30 H 1.08993 * 109.47257 * 296.63553 * 14 13 3 31 31 H 1.08005 * 120.77240 * 0.04161 * 16 15 14 32 32 H 1.07998 * 120.43059 * 179.97438 * 17 16 15 33 33 H 1.07993 * 119.60313 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 0.8406 5 6 3.5417 1.4443 0.1270 6 1 4.1486 1.8883 -0.6483 7 6 4.1408 0.8792 1.2327 8 7 3.4017 0.3381 2.1765 9 14 6.0021 0.8821 1.3903 10 1 6.4374 2.1155 2.0934 11 1 6.4351 -0.3085 2.1653 12 1 6.6135 0.8414 0.0377 13 7 1.6541 2.0982 -1.2564 14 6 1.5408 3.5521 -1.0783 15 6 1.2254 4.1974 -2.4031 16 6 2.2487 4.6166 -3.2410 17 6 1.9132 5.2053 -4.4490 18 6 0.5757 5.3553 -4.7779 19 9 0.2367 5.9276 -5.9538 20 7 -0.3711 4.9440 -3.9548 21 6 -0.0858 4.3794 -2.7969 22 1 -0.3633 -1.0220 0.1081 23 1 -0.3633 0.6046 0.8310 24 1 -0.3634 0.4174 -0.9391 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8232 -0.0592 2.9546 28 1 0.7955 1.7104 -1.6179 29 1 2.4831 3.9459 -0.6976 30 1 0.7427 3.7701 -0.3688 31 1 3.2829 4.4867 -2.9579 32 1 2.6842 5.5437 -5.1254 33 1 -0.8871 4.0558 -2.1493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189580112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:46 Heat of formation + Delta-G solvation = -31.960256 kcal Electronic energy + Delta-G solvation = -16394.648362 eV Core-core repulsion = 13561.892377 eV Total energy + Delta-G solvation = -2832.755985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.02986 -41.12062 -38.14206 -35.02486 -33.75219 -33.06443 -31.29658 -28.55546 -26.27769 -24.90878 -24.42463 -22.71087 -21.42482 -19.06497 -18.44205 -18.18019 -17.10010 -16.82442 -16.65388 -15.80298 -15.70678 -15.40009 -14.84338 -14.57764 -14.32271 -14.03472 -13.80719 -13.63799 -13.21878 -12.95435 -12.87103 -12.61070 -12.50066 -11.94830 -11.54958 -11.46506 -11.05387 -10.91677 -10.67112 -10.39787 -9.88864 -8.99794 -8.03423 -6.14851 -0.10879 0.14968 1.44067 1.46495 1.55704 2.46433 2.55367 2.59101 3.22671 3.51740 3.67532 3.87383 3.96296 4.02071 4.41061 4.51842 4.60008 4.65656 4.71146 4.76137 4.92959 4.95070 5.13571 5.24148 5.34171 5.41173 5.60787 5.63306 5.78341 5.92158 6.37863 6.50971 6.59449 6.96752 6.99619 7.54210 8.99660 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.030647 B = 0.005674 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.422684 B = 4933.572216 C = 5645.536998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.023 1.023 5 C -0.509 4.509 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.682 5.682 14 C 0.113 3.887 15 C -0.130 4.130 16 C -0.030 4.030 17 C -0.180 4.180 18 C 0.278 3.722 19 F -0.121 7.121 20 N -0.537 5.537 21 C 0.135 3.865 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.259 0.741 28 H 0.329 0.671 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.158 0.842 32 H 0.175 0.825 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 7.366 -8.972 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.117 3.883 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.314 5.314 14 C -0.017 4.017 15 C -0.133 4.133 16 C -0.056 4.056 17 C -0.201 4.201 18 C 0.124 3.876 19 F -0.101 7.101 20 N -0.252 5.252 21 C -0.022 4.022 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.098 7.442 -9.334 12.622 hybrid contribution 0.858 -0.126 0.904 1.253 sum -3.241 7.316 -8.430 11.623 Atomic orbital electron populations 1.21759 0.96256 1.01109 1.00641 1.21615 0.94237 0.99136 1.01178 1.18954 0.94109 0.90557 0.84710 1.00583 1.21488 0.92746 1.36305 1.04226 0.92774 1.25649 1.01997 0.95437 0.95711 1.70001 1.36192 1.39884 1.09986 0.85637 0.81143 0.77325 0.77972 1.20360 1.21346 1.19541 1.60619 1.37413 1.02127 1.31223 1.20641 1.00929 0.88907 0.91217 1.20985 0.94400 0.99611 0.98258 1.21681 1.01198 0.91436 0.91330 1.22042 0.95131 1.03285 0.99615 1.18416 0.90199 0.95889 0.83069 1.91587 1.93694 1.81623 1.43166 1.66974 1.38534 1.13932 1.05742 1.22634 0.96082 0.92936 0.90511 0.92732 0.94168 0.92274 0.94635 0.91435 0.93185 0.85263 0.90922 0.94298 0.82396 0.80797 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.63 71.98 0.69 -4.25 16 2 C -0.12 -5.53 5.35 30.59 0.16 -5.36 16 3 C 0.22 10.52 2.03 44.17 0.09 10.61 16 4 H -0.02 -1.21 7.82 -2.39 -0.02 -1.23 16 5 C -0.51 -26.74 8.63 25.60 0.22 -26.52 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.54 5.29 84.65 0.45 0.99 16 8 N -0.92 -51.27 11.29 21.45 0.24 -51.02 16 9 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.68 -25.92 6.27 -499.48 -3.13 -29.05 16 14 C 0.11 3.65 5.60 85.56 0.48 4.13 16 15 C -0.13 -3.52 5.44 -19.77 -0.11 -3.63 16 16 C -0.03 -0.74 9.86 22.45 0.22 -0.52 16 17 C -0.18 -3.97 10.09 22.41 0.23 -3.75 16 18 C 0.28 7.35 8.41 84.74 0.71 8.07 16 19 F -0.12 -3.19 17.29 44.97 0.78 -2.41 16 20 N -0.54 -15.38 10.37 -196.93 -2.04 -17.42 16 21 C 0.13 3.50 10.86 84.65 0.92 4.42 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.79 6.65 -2.39 -0.02 1.78 16 25 H 0.03 1.59 8.14 -2.39 -0.02 1.58 16 26 H 0.07 3.50 5.95 -2.39 -0.01 3.49 16 27 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 28 H 0.33 11.29 6.59 -89.69 -0.59 10.70 16 29 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 30 H 0.04 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -59.04 285.02 2.46 -56.58 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.52 Total: 14.57 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.07 Total: -15.82 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -4.93 Total: -97.49 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -59.04 2.46 -56.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189580112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.618 kcal (2) G-P(sol) polarization free energy of solvation -59.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds