Wall clock time and date at job start Sun Mar 29 2020 22:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47545 * 2 1 4 4 N 1.46498 * 109.47604 * 180.02562 * 3 2 1 5 5 C 1.36933 * 120.00299 * 89.48108 * 4 3 2 6 6 H 1.07998 * 120.00137 * 34.24736 * 5 4 3 7 7 C 1.38812 * 119.99973 * 213.97298 * 5 4 3 8 8 N 1.31623 * 119.99800 * 22.97724 * 7 5 4 9 9 Si 1.86798 * 120.00261 * 202.98191 * 7 5 4 10 10 H 1.48501 * 109.46811 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47445 * 119.99663 * 9 7 5 12 12 H 1.48499 * 109.47246 * 239.99870 * 9 7 5 13 13 C 1.46503 * 119.99410 * 269.48340 * 4 3 2 14 14 C 1.50707 * 109.46970 * 269.99346 * 13 4 3 15 15 C 1.38233 * 120.40916 * 269.73033 * 14 13 4 16 16 N 1.31843 * 120.81944 * 179.68356 * 15 14 13 17 17 C 1.31865 * 121.75115 * 0.62634 * 16 15 14 18 18 C 1.38427 * 120.72627 * 359.65638 * 17 16 15 19 19 F 1.35100 * 120.44252 * 180.02562 * 18 17 16 20 20 C 1.38597 * 120.40137 * 90.00236 * 14 13 4 21 21 H 1.08993 * 109.47260 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47220 * 300.00518 * 1 2 3 23 23 H 1.09010 * 109.46693 * 60.00514 * 1 2 3 24 24 H 1.08999 * 109.47446 * 239.99816 * 2 1 3 25 25 H 1.09005 * 109.47140 * 119.99557 * 2 1 3 26 26 H 1.09007 * 109.47254 * 59.99379 * 3 2 1 27 27 H 1.09007 * 109.46985 * 300.00192 * 3 2 1 28 28 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47648 * 29.99713 * 13 4 3 30 30 H 1.08997 * 109.46959 * 150.00195 * 13 4 3 31 31 H 1.08001 * 119.58324 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.63834 * 179.68919 * 17 16 15 33 33 H 1.07994 * 120.79764 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1893 1.4319 -1.1867 6 1 3.7894 1.9506 -2.0454 7 6 5.3996 0.7593 -1.2838 8 7 5.6809 -0.2140 -0.4434 9 14 6.6294 1.2354 -2.6068 10 1 6.0774 2.3506 -3.4173 11 1 7.8994 1.6671 -1.9699 12 1 6.8886 0.0666 -3.4854 13 6 4.2380 1.4537 1.2679 14 6 4.4894 2.8784 1.6901 15 6 5.6410 3.5326 1.2944 16 7 5.8662 4.7809 1.6539 17 6 5.0170 5.4494 2.4094 18 6 3.8449 4.8587 2.8491 19 9 2.9787 5.5490 3.6226 20 6 3.5713 3.5469 2.4847 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.5268 -0.6838 -0.5110 29 1 3.6492 0.9467 2.0323 30 1 5.1903 0.9388 1.1417 31 1 6.3629 3.0162 0.6791 32 1 5.2382 6.4693 2.6878 33 1 2.6650 3.0594 2.8120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230954994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:45 Heat of formation + Delta-G solvation = -2.974512 kcal Electronic energy + Delta-G solvation = -16937.618813 eV Core-core repulsion = 14106.119744 eV Total energy + Delta-G solvation = -2831.499069 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.64535 -39.53534 -36.32281 -33.18057 -32.31377 -30.82969 -30.10033 -26.23891 -25.65283 -23.21117 -22.61993 -21.33343 -19.97873 -17.23865 -16.69543 -16.52636 -16.27702 -15.45095 -14.87616 -14.38148 -14.01670 -13.55017 -13.44453 -13.15795 -12.71420 -12.70253 -12.54057 -11.82404 -11.51446 -11.41411 -11.07454 -10.85298 -10.66761 -10.41789 -10.12547 -10.09968 -9.77397 -9.22627 -9.16473 -8.63965 -8.33387 -6.80331 -5.95502 -3.47049 1.43234 1.61225 3.28899 3.39478 3.42648 4.13128 4.39403 4.45786 4.90989 5.11515 5.17246 5.32770 5.43118 5.53252 5.68950 5.76941 5.93027 6.06473 6.18111 6.23288 6.35168 6.43294 6.49734 6.54599 6.63790 6.85684 6.97201 7.14285 7.19416 7.46502 7.70089 8.30990 8.35545 9.00491 9.63709 10.19556 11.05255 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.010276 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.697897 B = 2724.115690 C = 4049.993963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.148 3.852 4 N -0.575 5.575 5 C -0.255 4.255 6 H 0.064 0.936 7 C 0.011 3.989 8 N -0.882 5.882 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.289 1.289 13 C 0.171 3.829 14 C -0.090 4.090 15 C 0.104 3.896 16 N -0.464 5.464 17 C 0.044 3.956 18 C 0.036 3.964 19 F -0.143 7.143 20 C -0.117 4.117 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.257 0.743 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 4.451 5.055 8.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.022 3.978 4 N -0.293 5.293 5 C -0.384 4.384 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.524 5.524 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.215 1.215 13 C 0.044 3.956 14 C -0.096 4.096 15 C -0.054 4.054 16 N -0.172 5.172 17 C -0.114 4.114 18 C 0.015 3.985 19 F -0.122 7.122 20 C -0.144 4.144 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.462 4.750 4.767 7.568 hybrid contribution -0.352 -0.047 -0.259 0.439 sum -3.814 4.703 4.508 7.549 Atomic orbital electron populations 1.21757 0.97688 1.00421 1.00718 1.22056 0.93100 1.00500 1.02241 1.20972 0.84787 0.93698 0.98369 1.43827 0.99540 1.84070 1.01832 1.19137 1.03091 1.26259 0.89918 0.91826 1.25076 1.00585 0.95156 0.98159 1.69964 1.23719 1.19779 1.38902 0.86398 0.81600 0.78308 0.81651 1.19976 1.20982 1.21530 1.20112 1.01622 0.87036 0.86826 1.22294 0.92535 1.02389 0.92334 1.22808 0.96511 0.89521 0.96593 1.67678 1.30445 1.09001 1.10056 1.22604 0.90321 1.00627 0.97872 1.18854 0.90916 0.91995 0.96759 1.91453 1.68692 1.79131 1.72888 1.21573 1.00885 0.92658 0.99318 0.93767 0.93678 0.93390 0.91723 0.92949 0.94884 0.93869 0.93263 0.94158 0.86679 0.82239 0.82837 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.58 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.93 5.67 -4.04 -0.02 2.90 16 4 N -0.57 -13.16 2.44 -174.60 -0.43 -13.59 16 5 C -0.25 -6.46 9.49 -15.06 -0.14 -6.61 16 6 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 7 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16 8 N -0.88 -23.26 11.31 55.49 0.63 -22.63 16 9 Si 0.89 20.43 29.61 -169.99 -5.03 15.39 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.17 3.67 5.44 -5.19 -0.03 3.64 16 14 C -0.09 -1.75 5.48 -104.49 -0.57 -2.33 16 15 C 0.10 2.07 10.86 -17.55 -0.19 1.88 16 16 N -0.46 -8.78 10.36 -13.20 -0.14 -8.92 16 17 C 0.04 0.74 11.17 -17.47 -0.20 0.54 16 18 C 0.04 0.60 7.34 -39.28 -0.29 0.32 16 19 F -0.14 -2.25 17.28 2.25 0.04 -2.21 16 20 C -0.12 -2.04 9.85 -39.21 -0.39 -2.43 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 27 H 0.04 0.86 8.04 -51.92 -0.42 0.44 16 28 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.04 0.81 8.02 -51.93 -0.42 0.40 16 30 H 0.12 2.77 5.26 -51.93 -0.27 2.50 16 31 H 0.16 3.30 8.06 -52.49 -0.42 2.88 16 32 H 0.15 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.14 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 289.27 15.07 4.36 4.36 Total: -1.00 -26.25 289.27 -6.74 -33.00 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.46 Total: 1.05 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.71 Total: -6.46 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.07 Total: -45.13 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.25 -6.74 -33.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230954994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.021 kcal (2) G-P(sol) polarization free energy of solvation -26.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds