Wall clock time and date at job start Sun Mar 29 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47545 * 2 1 4 4 N 1.46498 * 109.47604 * 180.02562 * 3 2 1 5 5 C 1.36933 * 120.00299 * 89.48108 * 4 3 2 6 6 H 1.07998 * 120.00137 * 34.24736 * 5 4 3 7 7 C 1.38812 * 119.99973 * 213.97298 * 5 4 3 8 8 N 1.31623 * 119.99800 * 22.97724 * 7 5 4 9 9 Si 1.86798 * 120.00261 * 202.98191 * 7 5 4 10 10 H 1.48501 * 109.46811 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47445 * 119.99663 * 9 7 5 12 12 H 1.48499 * 109.47246 * 239.99870 * 9 7 5 13 13 C 1.46503 * 119.99410 * 269.48340 * 4 3 2 14 14 C 1.50707 * 109.46970 * 269.99346 * 13 4 3 15 15 C 1.38233 * 120.40916 * 269.73033 * 14 13 4 16 16 N 1.31843 * 120.81944 * 179.68356 * 15 14 13 17 17 C 1.31865 * 121.75115 * 0.62634 * 16 15 14 18 18 C 1.38427 * 120.72627 * 359.65638 * 17 16 15 19 19 F 1.35100 * 120.44252 * 180.02562 * 18 17 16 20 20 C 1.38597 * 120.40137 * 90.00236 * 14 13 4 21 21 H 1.08993 * 109.47260 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47220 * 300.00518 * 1 2 3 23 23 H 1.09010 * 109.46693 * 60.00514 * 1 2 3 24 24 H 1.08999 * 109.47446 * 239.99816 * 2 1 3 25 25 H 1.09005 * 109.47140 * 119.99557 * 2 1 3 26 26 H 1.09007 * 109.47254 * 59.99379 * 3 2 1 27 27 H 1.09007 * 109.46985 * 300.00192 * 3 2 1 28 28 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47648 * 29.99713 * 13 4 3 30 30 H 1.08997 * 109.46959 * 150.00195 * 13 4 3 31 31 H 1.08001 * 119.58324 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.63834 * 179.68919 * 17 16 15 33 33 H 1.07994 * 120.79764 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1893 1.4319 -1.1867 6 1 3.7894 1.9506 -2.0454 7 6 5.3996 0.7593 -1.2838 8 7 5.6809 -0.2140 -0.4434 9 14 6.6294 1.2354 -2.6068 10 1 6.0774 2.3506 -3.4173 11 1 7.8994 1.6671 -1.9699 12 1 6.8886 0.0666 -3.4854 13 6 4.2380 1.4537 1.2679 14 6 4.4894 2.8784 1.6901 15 6 5.6410 3.5326 1.2944 16 7 5.8662 4.7809 1.6539 17 6 5.0170 5.4494 2.4094 18 6 3.8449 4.8587 2.8491 19 9 2.9787 5.5490 3.6226 20 6 3.5713 3.5469 2.4847 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.5268 -0.6838 -0.5110 29 1 3.6492 0.9467 2.0323 30 1 5.1903 0.9388 1.1417 31 1 6.3629 3.0162 0.6791 32 1 5.2382 6.4693 2.6878 33 1 2.6650 3.0594 2.8120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230954994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:44 Heat of formation + Delta-G solvation = -15.908111 kcal Electronic energy + Delta-G solvation = -16938.179656 eV Core-core repulsion = 14106.119744 eV Total energy + Delta-G solvation = -2832.059912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.94618 -40.99557 -37.99774 -34.72045 -33.97197 -32.39608 -31.63924 -27.82318 -27.34528 -24.64891 -24.20584 -22.84173 -21.58426 -18.93194 -18.12077 -18.03013 -17.71191 -16.77439 -16.71986 -15.96119 -15.69666 -15.07094 -14.90128 -14.71401 -14.18708 -14.12961 -13.90133 -13.40253 -13.12549 -13.03755 -12.73302 -12.52985 -12.23155 -12.07684 -11.89673 -11.79650 -11.33293 -10.70370 -10.66295 -10.47163 -9.77906 -8.65004 -7.87229 -5.42093 0.00701 0.19327 1.43736 1.50531 1.57503 2.49100 2.69584 3.06807 3.23202 3.51808 3.75341 3.82704 3.92019 4.08820 4.27930 4.38411 4.44552 4.68581 4.80205 4.85237 4.87844 4.92536 4.98862 5.18683 5.27626 5.32135 5.46911 5.58775 5.63187 5.73959 5.81592 6.43949 6.88945 7.12497 7.81017 8.31977 9.10472 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.010276 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.697897 B = 2724.115690 C = 4049.993963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.145 3.855 4 N -0.589 5.589 5 C -0.260 4.260 6 H 0.052 0.948 7 C -0.024 4.024 8 N -0.906 5.906 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.292 1.292 13 C 0.178 3.822 14 C -0.100 4.100 15 C 0.090 3.910 16 N -0.478 5.478 17 C 0.054 3.946 18 C 0.044 3.956 19 F -0.132 7.132 20 C -0.109 4.109 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.254 0.746 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.190 0.810 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 5.912 6.066 10.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.020 3.980 4 N -0.308 5.308 5 C -0.390 4.390 6 H 0.070 0.930 7 C -0.222 4.222 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.219 1.219 13 C 0.051 3.949 14 C -0.105 4.105 15 C -0.067 4.067 16 N -0.186 5.186 17 C -0.105 4.105 18 C 0.023 3.977 19 F -0.110 7.110 20 C -0.137 4.137 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.207 0.793 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.728 6.220 5.784 9.721 hybrid contribution -0.015 -0.400 -0.476 0.622 sum -4.743 5.820 5.307 9.195 Atomic orbital electron populations 1.21668 0.94324 1.01687 1.01948 1.21912 0.95987 0.99083 1.00072 1.21087 0.83231 0.94552 0.99125 1.43997 1.00788 1.84522 1.01514 1.19185 1.03518 1.25660 0.90675 0.93050 1.25521 1.01684 0.95308 0.99712 1.70054 1.23838 1.20772 1.40304 0.85650 0.80001 0.77659 0.79844 1.19980 1.21025 1.21884 1.19884 1.00227 0.88229 0.86542 1.21970 0.93332 1.01302 0.93930 1.22597 0.96661 0.90251 0.97217 1.67694 1.31348 1.08566 1.10963 1.23185 0.89516 1.01736 0.96024 1.18787 0.90943 0.91641 0.96370 1.91490 1.68309 1.78783 1.72467 1.21710 1.00836 0.93000 0.98105 0.92549 0.91843 0.92712 0.94969 0.94025 0.92713 0.94303 0.93606 0.93239 0.89506 0.84148 0.79286 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.13 -4.78 6.26 30.59 0.19 -4.59 16 3 C 0.15 5.63 5.67 86.38 0.49 6.12 16 4 N -0.59 -27.13 2.44 -706.33 -1.72 -28.85 16 5 C -0.26 -13.45 9.49 84.03 0.80 -12.66 16 6 H 0.05 2.74 7.93 -2.91 -0.02 2.71 16 7 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 8 N -0.91 -49.16 11.31 21.65 0.24 -48.91 16 9 Si 0.94 42.89 29.61 68.60 2.03 44.93 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.18 7.67 5.44 85.63 0.47 8.13 16 14 C -0.10 -3.83 5.48 -19.78 -0.11 -3.94 16 15 C 0.09 3.57 10.86 84.69 0.92 4.49 16 16 N -0.48 -17.37 10.36 -195.66 -2.03 -19.40 16 17 C 0.05 1.64 11.17 84.73 0.95 2.59 16 18 C 0.04 1.32 7.34 22.47 0.17 1.49 16 19 F -0.13 -3.62 17.28 44.97 0.78 -2.85 16 20 C -0.11 -3.53 9.85 22.51 0.22 -3.31 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.05 1.86 8.07 -2.38 -0.02 1.85 16 27 H 0.04 1.52 8.04 -2.38 -0.02 1.50 16 28 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 29 H 0.05 1.98 8.02 -2.39 -0.02 1.96 16 30 H 0.09 4.31 5.26 -2.39 -0.01 4.30 16 31 H 0.14 6.04 8.06 -2.91 -0.02 6.01 16 32 H 0.19 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -56.08 289.27 5.62 -50.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.09 Total: 10.18 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.22 Total: -5.57 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -3.50 Total: -97.16 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.93 kcal Total: -56.08 5.62 -50.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230954994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.556 kcal (2) G-P(sol) polarization free energy of solvation -56.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds