Wall clock time and date at job start Sun Mar 29 2020 22:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46966 * 59.99815 * 8 6 4 10 10 H 1.48494 * 109.47295 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47379 * 300.00094 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.50696 * 109.47351 * 169.99890 * 14 12 2 16 16 C 1.38235 * 120.40560 * 269.72867 * 15 14 12 17 17 N 1.31848 * 120.81857 * 179.72451 * 16 15 14 18 18 C 1.31869 * 121.75442 * 0.53232 * 17 16 15 19 19 C 1.38422 * 120.72239 * 359.75371 * 18 17 16 20 20 F 1.35105 * 120.44309 * 179.97438 * 19 18 17 21 21 C 1.38594 * 120.40548 * 89.99647 * 15 14 12 22 22 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 24 24 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 25 25 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 27 27 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 28 28 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 29 29 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 30 30 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 31 31 H 1.07999 * 119.59215 * 359.97438 * 16 15 14 32 32 H 1.07995 * 119.63774 * 179.72808 * 18 17 16 33 33 H 1.07995 * 120.79705 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8077 -1.1190 4.0076 10 1 1.8281 -0.4193 5.2204 11 1 1.8281 -2.5199 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5794 16 6 3.7634 -0.1182 -3.8929 17 7 4.4068 -0.6533 -4.9117 18 6 3.8533 -1.5752 -5.6752 19 6 2.5663 -2.0200 -5.4265 20 9 2.0045 -2.9643 -6.2126 21 6 1.8601 -1.4826 -4.3581 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 0.7089 1.1612 3.4844 26 1 1.8663 -2.5522 -2.1648 27 1 0.3555 -1.9520 -1.4399 28 1 1.6466 -2.5988 -0.3991 29 1 0.6814 0.1052 -2.6087 30 1 2.1025 1.1188 -2.2603 31 1 4.2488 0.6377 -3.2933 32 1 4.4100 -1.9873 -6.5037 33 1 0.8546 -1.8100 -4.1390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231896321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:00 Heat of formation + Delta-G solvation = -20.994991 kcal Electronic energy + Delta-G solvation = -16721.984596 eV Core-core repulsion = 13889.704100 eV Total energy + Delta-G solvation = -2832.280496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.99016 -41.21308 -38.86218 -35.15807 -33.58796 -32.21993 -30.32941 -28.37256 -27.25331 -25.62347 -24.69211 -23.01153 -21.04174 -18.42794 -18.27225 -18.09848 -17.74171 -17.11298 -16.76476 -16.12700 -15.50360 -15.28315 -14.83557 -14.48888 -14.28952 -14.14159 -14.01617 -13.56453 -13.07836 -12.91931 -12.75582 -12.59874 -12.49803 -12.24510 -12.03531 -11.74948 -10.96698 -10.77110 -10.62688 -10.46665 -9.89233 -8.88896 -8.09107 -6.19280 -0.08433 0.05563 1.44731 1.45631 1.53048 2.43591 2.58967 2.98043 3.20449 3.41615 3.51981 3.72979 3.74888 3.93465 4.12189 4.45137 4.56754 4.67560 4.71086 4.79558 4.81850 4.88152 4.92446 5.13225 5.15976 5.18170 5.53572 5.62789 5.72152 5.80194 6.20894 6.46052 6.69649 6.80705 6.92934 7.49722 8.96339 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.041334 B = 0.005414 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.242103 B = 5170.791019 C = 5222.571561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.014 0.986 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.539 5.539 13 C 0.038 3.962 14 C 0.094 3.906 15 C -0.089 4.089 16 C 0.102 3.898 17 N -0.475 5.475 18 C 0.069 3.931 19 C 0.042 3.958 20 F -0.133 7.133 21 C -0.105 4.105 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.191 0.809 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 -3.748 -13.977 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.111 4.111 14 C -0.035 4.035 15 C -0.092 4.092 16 C -0.055 4.055 17 N -0.182 5.182 18 C -0.090 4.090 19 C 0.020 3.980 20 F -0.111 7.111 21 C -0.132 4.132 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.188 0.812 32 H 0.208 0.792 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.617 -3.436 -13.990 14.642 hybrid contribution -1.740 -0.623 1.093 2.147 sum 0.877 -4.059 -12.897 13.549 Atomic orbital electron populations 1.22222 1.00135 0.99339 1.00223 1.19095 0.90139 0.93139 0.86724 0.96790 1.21325 1.30564 1.12442 0.90930 0.92797 1.25615 0.95434 0.95797 1.01615 1.69984 1.37790 1.24081 1.24033 0.85664 0.78678 0.78668 0.78899 1.19992 1.21074 1.19872 1.62267 1.59185 1.03060 1.01678 1.22235 0.96538 0.91056 1.01226 1.20980 0.97396 0.97476 0.87600 1.20729 0.95860 0.96416 0.96181 1.22944 0.91058 0.98307 0.93204 1.67810 1.36325 1.08877 1.05205 1.23277 0.91327 0.94431 0.99965 1.18795 0.94496 0.91929 0.92748 1.91512 1.85122 1.61895 1.72611 1.21743 1.01818 0.96089 0.93591 0.94844 0.92052 0.95243 0.92989 0.91882 0.95738 0.92750 0.93510 0.89618 0.81204 0.79206 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.32 8.22 71.98 0.59 -6.72 16 2 C 0.22 10.34 2.31 44.17 0.10 10.44 16 3 H 0.01 0.75 7.93 -2.39 -0.02 0.73 16 4 C -0.51 -27.41 7.91 25.60 0.20 -27.21 16 5 H 0.05 2.90 7.12 -2.91 -0.02 2.88 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -51.42 11.32 21.45 0.24 -51.18 16 8 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.54 -21.32 4.69 -906.02 -4.25 -25.57 16 13 C 0.04 1.37 8.30 127.69 1.06 2.43 16 14 C 0.09 2.98 4.71 85.55 0.40 3.38 16 15 C -0.09 -2.46 4.89 -19.78 -0.10 -2.56 16 16 C 0.10 2.76 10.86 84.69 0.92 3.68 16 17 N -0.47 -12.57 10.36 -195.67 -2.03 -14.60 16 18 C 0.07 1.55 11.17 84.73 0.95 2.49 16 19 C 0.04 0.98 7.35 22.47 0.17 1.14 16 20 F -0.13 -3.03 17.28 44.97 0.78 -2.26 16 21 C -0.11 -2.62 8.14 22.51 0.18 -2.44 16 22 H 0.03 1.48 6.42 -2.39 -0.02 1.46 16 23 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 24 H 0.03 1.17 6.91 -2.39 -0.02 1.15 16 25 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 26 H 0.06 2.00 6.18 -2.39 -0.01 1.99 16 27 H 0.02 0.85 6.46 -2.39 -0.02 0.83 16 28 H 0.05 2.20 6.76 -2.38 -0.02 2.18 16 29 H 0.05 1.43 7.01 -2.39 -0.02 1.41 16 30 H 0.09 2.68 7.88 -2.39 -0.02 2.67 16 31 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -57.86 274.88 2.80 -55.05 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.11 Total: 7.67 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.93 Total: -14.15 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -6.04 Total: -91.35 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -57.86 2.80 -55.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231896321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.057 kcal (2) G-P(sol) polarization free energy of solvation -57.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds