Wall clock time and date at job start Sun Mar 29 2020 22:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47129 * 2 1 4 4 N 1.46897 * 109.47699 * 120.00307 * 2 1 3 5 5 C 1.46897 * 110.99974 * 275.00230 * 4 2 1 6 6 C 1.53001 * 109.47435 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47640 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99780 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00596 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99559 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00602 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47152 * 89.99840 * 11 9 7 13 13 H 1.48496 * 109.47289 * 210.00366 * 11 9 7 14 14 H 1.48503 * 109.46809 * 330.00260 * 11 9 7 15 15 C 1.50701 * 109.47019 * 240.00291 * 2 1 3 16 16 C 1.38235 * 119.58732 * 84.99781 * 15 2 1 17 17 C 1.38592 * 119.18672 * 179.97438 * 16 15 2 18 18 C 1.38879 * 118.40165 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.44564 * 179.97438 * 18 17 16 20 20 C 1.38426 * 119.11051 * 359.95417 * 18 17 16 21 21 N 1.31839 * 119.58952 * 264.97529 * 15 2 1 22 22 H 1.09009 * 109.46847 * 299.99826 * 1 2 3 23 23 H 1.09001 * 109.47279 * 59.99475 * 1 2 3 24 24 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 25 25 H 1.00895 * 111.00433 * 151.04632 * 4 2 1 26 26 H 1.09004 * 109.47206 * 299.99472 * 5 4 2 27 27 H 1.09003 * 109.47452 * 59.99574 * 5 4 2 28 28 H 1.09004 * 109.46678 * 300.00023 * 6 5 4 29 29 H 1.09003 * 109.46963 * 59.99502 * 6 5 4 30 30 H 0.96995 * 119.99909 * 180.02562 * 10 9 7 31 31 H 1.08002 * 120.40756 * 359.70671 * 16 15 2 32 32 H 1.08003 * 120.79914 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.63165 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5953 -0.5333 3.5744 7 6 2.6603 0.4055 4.7514 8 1 2.3650 1.4379 4.6356 9 6 3.0957 -0.0537 5.9764 10 7 3.4548 -1.3110 6.1175 11 14 3.1756 1.1098 7.4355 12 1 1.8815 1.0808 8.1632 13 1 4.2667 0.6845 8.3486 14 1 3.4422 2.4893 6.9546 15 6 2.0323 -0.7104 -1.2305 16 6 2.1610 -0.0124 -2.4168 17 6 2.6242 -0.6738 -3.5432 18 6 2.9423 -2.0212 -3.4340 19 9 3.3970 -2.7064 -4.5060 20 6 2.7877 -2.6528 -2.2120 21 7 2.3439 -1.9895 -1.1621 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 2.9174 -1.1205 1.0286 26 1 2.7589 1.0461 2.1182 27 1 1.0871 0.6162 2.5525 28 1 1.9185 -1.3567 3.8028 29 1 3.5906 -0.9273 3.3689 30 1 3.7608 -1.6342 6.9793 31 1 1.8996 1.0343 -2.4663 32 1 2.7344 -0.1540 -4.4835 33 1 3.0330 -3.7003 -2.1175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273304336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:49 Heat of formation + Delta-G solvation = -18.443421 kcal Electronic energy + Delta-G solvation = -16013.852579 eV Core-core repulsion = 13181.682728 eV Total energy + Delta-G solvation = -2832.169851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.15318 -40.39594 -36.51231 -33.39398 -32.67454 -31.69231 -29.53854 -27.98464 -24.65496 -24.21080 -23.29638 -20.79018 -20.40510 -17.84030 -17.36795 -16.58449 -16.16954 -15.98957 -15.10865 -14.53514 -14.32533 -14.19852 -13.88679 -13.73262 -13.21611 -12.73570 -12.60176 -12.22205 -12.00341 -11.60001 -11.17276 -11.02103 -10.81286 -10.52231 -10.13348 -9.94546 -9.67308 -9.34239 -9.11074 -8.95187 -8.31956 -7.75711 -5.96270 -3.98967 0.71950 0.92149 3.34116 3.40092 3.42970 3.45540 3.81146 4.14884 4.30939 4.47720 4.54553 4.59631 4.96240 5.19016 5.37436 5.39524 5.51080 5.53699 5.63770 5.68741 5.92452 6.07310 6.32020 6.39407 6.43938 6.49491 7.02666 7.49012 7.74822 7.79721 7.89771 8.03787 8.14469 8.47216 9.08574 9.64557 11.15153 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.046772 B = 0.004134 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.506369 B = 6771.329261 C = 7091.498061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.132 3.868 3 H 0.057 0.943 4 N -0.673 5.673 5 C 0.064 3.936 6 C 0.026 3.974 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.125 3.875 16 C -0.141 4.141 17 C -0.109 4.109 18 C 0.035 3.965 19 F -0.134 7.134 20 C 0.080 3.920 21 N -0.431 5.431 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.344 0.656 26 H 0.014 0.986 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 1.727 -19.709 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.021 3.979 3 H 0.075 0.925 4 N -0.306 5.306 5 C -0.064 4.064 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.013 4.013 16 C -0.162 4.162 17 C -0.135 4.135 18 C 0.013 3.987 19 F -0.113 7.113 20 C -0.079 4.079 21 N -0.138 5.138 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.164 0.836 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.324 0.895 -18.640 18.955 hybrid contribution 1.084 1.406 -0.475 1.838 sum -2.240 2.301 -19.115 19.383 Atomic orbital electron populations 1.21767 0.93246 1.02817 1.01324 1.20465 0.96396 0.94535 0.86538 0.92510 1.60543 1.34248 1.33090 1.02707 1.22257 0.99555 0.93496 0.91092 1.19052 0.96305 0.95813 0.89988 1.21179 1.43940 0.96317 0.94603 0.92790 1.25002 0.95446 0.95082 0.98825 1.69979 1.44483 1.14341 1.24375 0.86597 0.77676 0.81121 0.82598 1.20642 1.21254 1.19957 1.21650 0.94330 0.90098 0.95263 1.21896 1.00152 1.01846 0.92286 1.21601 0.98664 0.92826 1.00446 1.18879 1.02670 0.91553 0.85597 1.91511 1.86617 1.79364 1.53786 1.23050 0.96894 1.01255 0.86692 1.67628 1.08482 1.08392 1.29337 0.91457 0.93122 0.91685 0.83643 0.96806 0.92218 0.95515 0.96839 0.93013 0.83790 0.83680 0.81518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.40 37.16 0.35 -1.40 16 2 C 0.13 1.90 2.86 -68.87 -0.20 1.71 16 3 H 0.06 0.77 7.77 -51.92 -0.40 0.37 16 4 N -0.67 -12.42 6.05 -107.95 -0.65 -13.07 16 5 C 0.06 1.35 5.42 -3.82 -0.02 1.33 16 6 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 11 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.12 1.65 5.70 -82.59 -0.47 1.18 16 16 C -0.14 -1.44 9.76 -39.45 -0.39 -1.83 16 17 C -0.11 -1.03 10.16 -39.21 -0.40 -1.43 16 18 C 0.03 0.37 7.35 -39.28 -0.29 0.09 16 19 F -0.13 -1.45 17.28 2.25 0.04 -1.41 16 20 C 0.08 0.96 11.17 -17.46 -0.20 0.76 16 21 N -0.43 -6.20 9.28 -9.42 -0.09 -6.29 16 22 H 0.07 0.92 7.45 -51.92 -0.39 0.54 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.34 6.53 7.85 -39.29 -0.31 6.23 16 26 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 27 H 0.06 1.24 7.44 -51.93 -0.39 0.85 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -31.28 289.74 -7.19 -38.47 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.40 Total: 0.39 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.16 Total: -12.71 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.00 Total: -45.86 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.28 -7.19 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273304336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.027 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds