Wall clock time and date at job start Sun Mar 29 2020 22:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47129 * 2 1 4 4 N 1.46897 * 109.47699 * 120.00307 * 2 1 3 5 5 C 1.46897 * 110.99974 * 275.00230 * 4 2 1 6 6 C 1.53001 * 109.47435 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47640 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99780 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00596 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99559 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00602 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47152 * 89.99840 * 11 9 7 13 13 H 1.48496 * 109.47289 * 210.00366 * 11 9 7 14 14 H 1.48503 * 109.46809 * 330.00260 * 11 9 7 15 15 C 1.50701 * 109.47019 * 240.00291 * 2 1 3 16 16 C 1.38235 * 119.58732 * 84.99781 * 15 2 1 17 17 C 1.38592 * 119.18672 * 179.97438 * 16 15 2 18 18 C 1.38879 * 118.40165 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.44564 * 179.97438 * 18 17 16 20 20 C 1.38426 * 119.11051 * 359.95417 * 18 17 16 21 21 N 1.31839 * 119.58952 * 264.97529 * 15 2 1 22 22 H 1.09009 * 109.46847 * 299.99826 * 1 2 3 23 23 H 1.09001 * 109.47279 * 59.99475 * 1 2 3 24 24 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 25 25 H 1.00895 * 111.00433 * 151.04632 * 4 2 1 26 26 H 1.09004 * 109.47206 * 299.99472 * 5 4 2 27 27 H 1.09003 * 109.47452 * 59.99574 * 5 4 2 28 28 H 1.09004 * 109.46678 * 300.00023 * 6 5 4 29 29 H 1.09003 * 109.46963 * 59.99502 * 6 5 4 30 30 H 0.96995 * 119.99909 * 180.02562 * 10 9 7 31 31 H 1.08002 * 120.40756 * 359.70671 * 16 15 2 32 32 H 1.08003 * 120.79914 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.63165 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5953 -0.5333 3.5744 7 6 2.6603 0.4055 4.7514 8 1 2.3650 1.4379 4.6356 9 6 3.0957 -0.0537 5.9764 10 7 3.4548 -1.3110 6.1175 11 14 3.1756 1.1098 7.4355 12 1 1.8815 1.0808 8.1632 13 1 4.2667 0.6845 8.3486 14 1 3.4422 2.4893 6.9546 15 6 2.0323 -0.7104 -1.2305 16 6 2.1610 -0.0124 -2.4168 17 6 2.6242 -0.6738 -3.5432 18 6 2.9423 -2.0212 -3.4340 19 9 3.3970 -2.7064 -4.5060 20 6 2.7877 -2.6528 -2.2120 21 7 2.3439 -1.9895 -1.1621 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 2.9174 -1.1205 1.0286 26 1 2.7589 1.0461 2.1182 27 1 1.0871 0.6162 2.5525 28 1 1.9185 -1.3567 3.8028 29 1 3.5906 -0.9273 3.3689 30 1 3.7608 -1.6342 6.9793 31 1 1.8996 1.0343 -2.4663 32 1 2.7344 -0.1540 -4.4835 33 1 3.0330 -3.7003 -2.1175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273304336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:48 Heat of formation + Delta-G solvation = -39.155274 kcal Electronic energy + Delta-G solvation = -16014.750713 eV Core-core repulsion = 13181.682728 eV Total energy + Delta-G solvation = -2833.067985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.99697 -41.30732 -37.88465 -35.34428 -33.52991 -33.28480 -30.79954 -29.54147 -26.31354 -25.16488 -24.52641 -22.40595 -21.73692 -18.70108 -18.52520 -18.17669 -17.62027 -16.84735 -16.46630 -16.32436 -15.49900 -15.32265 -14.91734 -14.79579 -14.47614 -14.26186 -13.84358 -13.62641 -13.38700 -12.94997 -12.85720 -12.71780 -12.38927 -12.26210 -11.77097 -11.39228 -11.25280 -10.95144 -10.55327 -10.50331 -9.86609 -9.21198 -8.18388 -6.30432 -0.15116 0.12193 1.41609 1.43734 1.54553 2.41959 2.57188 2.94858 3.14998 3.21465 3.26692 3.69787 3.79008 3.97457 4.25193 4.37201 4.45137 4.56707 4.65676 4.69265 4.83701 4.85304 4.97623 5.00424 5.10034 5.37872 5.47289 5.60296 5.69470 5.81159 6.16576 6.30832 6.54072 6.87582 6.91664 7.39076 8.94043 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.046772 B = 0.004134 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.506369 B = 6771.329261 C = 7091.498061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.130 3.870 3 H 0.073 0.927 4 N -0.685 5.685 5 C 0.084 3.916 6 C 0.032 3.968 7 C -0.543 4.543 8 H 0.064 0.936 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.969 3.031 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.261 1.261 15 C 0.104 3.896 16 C -0.130 4.130 17 C -0.099 4.099 18 C 0.034 3.966 19 F -0.134 7.134 20 C 0.066 3.934 21 N -0.470 5.470 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.338 0.662 26 H 0.021 0.979 27 H 0.064 0.936 28 H -0.009 1.009 29 H -0.014 1.014 30 H 0.263 0.737 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 3.937 -21.016 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.019 3.981 3 H 0.091 0.909 4 N -0.317 5.317 5 C -0.045 4.045 6 C -0.006 4.006 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.199 4.199 10 N -0.574 5.574 11 Si 0.793 3.207 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.185 1.185 15 C -0.034 4.034 16 C -0.150 4.150 17 C -0.125 4.125 18 C 0.012 3.988 19 F -0.113 7.113 20 C -0.093 4.093 21 N -0.178 5.178 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.065 0.935 25 H 0.156 0.844 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.010 0.990 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.195 0.805 32 H 0.197 0.803 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.658 3.112 -19.973 20.542 hybrid contribution 1.191 0.654 -0.159 1.368 sum -2.467 3.766 -20.131 20.629 Atomic orbital electron populations 1.21740 0.92376 1.01983 1.02552 1.20573 0.97030 0.95059 0.85391 0.90887 1.60449 1.33978 1.33282 1.03965 1.21862 0.99418 0.93089 0.90097 1.18909 0.94110 0.95099 0.92453 1.21628 1.43941 0.97034 0.95564 0.91802 1.26018 0.94762 0.96852 1.02277 1.70130 1.45336 1.16565 1.25364 0.85390 0.77929 0.79070 0.78289 1.19729 1.20855 1.18465 1.21577 0.95814 0.90116 0.95864 1.22147 0.98761 1.03091 0.90979 1.21972 0.96914 0.92051 1.01567 1.18956 1.02419 0.92295 0.85118 1.91514 1.86604 1.79549 1.53615 1.23202 0.97292 1.01839 0.86936 1.67513 1.09924 1.09548 1.30863 0.92329 0.89725 0.93532 0.84351 0.96113 0.91740 0.99007 0.99591 0.92806 0.80546 0.80268 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.40 71.98 0.68 -2.52 16 2 C 0.13 3.59 2.86 44.17 0.13 3.72 16 3 H 0.07 1.80 7.77 -2.38 -0.02 1.78 16 4 N -0.68 -25.65 6.05 -495.44 -3.00 -28.65 16 5 C 0.08 3.58 5.42 86.30 0.47 4.05 16 6 C 0.03 1.75 5.23 29.85 0.16 1.91 16 7 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 10 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 11 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 15 C 0.10 2.62 5.70 42.56 0.24 2.86 16 16 C -0.13 -2.23 9.76 22.35 0.22 -2.01 16 17 C -0.10 -1.54 10.16 22.51 0.23 -1.31 16 18 C 0.03 0.67 7.35 22.47 0.17 0.84 16 19 F -0.13 -2.67 17.28 44.97 0.78 -1.90 16 20 C 0.07 1.55 11.17 84.73 0.95 2.50 16 21 N -0.47 -13.56 9.28 -183.71 -1.70 -15.26 16 22 H 0.06 1.54 7.45 -2.38 -0.02 1.52 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.34 13.29 7.85 -89.70 -0.70 12.59 16 26 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 27 H 0.06 2.67 7.44 -2.39 -0.02 2.65 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -69.12 289.74 2.71 -66.41 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.40 Total: 11.58 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.92 Total: -20.82 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -4.42 Total: -101.93 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.12 2.71 -66.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273304336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.252 kcal (2) G-P(sol) polarization free energy of solvation -69.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds