Wall clock time and date at job start Sun Mar 29 2020 22:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 N 1.46504 * 109.47436 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99739 * 264.39173 * 4 3 2 6 6 H 1.08001 * 119.99856 * 190.57102 * 5 4 3 7 7 C 1.38809 * 119.99833 * 10.56755 * 5 4 3 8 8 N 1.31620 * 120.00203 * 20.34912 * 7 5 4 9 9 Si 1.86800 * 119.99954 * 200.34111 * 7 5 4 10 10 H 1.48506 * 109.47312 * 84.97814 * 9 7 5 11 11 H 1.48499 * 109.47485 * 204.98276 * 9 7 5 12 12 H 1.48507 * 109.47035 * 324.98294 * 9 7 5 13 13 C 1.46494 * 119.99942 * 84.38821 * 4 3 2 14 14 C 1.50697 * 109.47346 * 270.00217 * 13 4 3 15 15 C 1.38238 * 119.58905 * 95.00376 * 14 13 4 16 16 C 1.38597 * 119.18787 * 180.02562 * 15 14 13 17 17 C 1.38881 * 118.39717 * 0.24447 * 16 15 14 18 18 F 1.35098 * 120.43853 * 179.74707 * 17 16 15 19 19 C 1.38423 * 119.11316 * 359.52942 * 17 16 15 20 20 N 1.31847 * 119.58729 * 275.02341 * 14 13 4 21 21 H 1.09000 * 109.46840 * 300.00112 * 1 2 3 22 22 H 1.09003 * 109.47277 * 59.99950 * 1 2 3 23 23 H 1.08992 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47144 * 240.00303 * 2 1 3 25 25 H 1.08998 * 109.47024 * 119.99643 * 2 1 3 26 26 H 1.09000 * 109.47359 * 59.99364 * 3 2 1 27 27 H 1.09003 * 109.46990 * 300.00225 * 3 2 1 28 28 H 0.97003 * 120.00009 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47304 * 150.00270 * 13 4 3 30 30 H 1.09007 * 109.47492 * 30.00614 * 13 4 3 31 31 H 1.07991 * 120.40857 * 0.02562 * 15 14 13 32 32 H 1.07997 * 120.79903 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.63560 * 180.20107 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5583 1.1794 6 1 5.2565 1.7298 1.1701 7 6 3.5143 1.4551 2.3874 8 7 2.3389 0.8648 2.4355 9 14 4.2729 2.1540 3.9448 10 1 3.9474 3.5993 4.0485 11 1 3.7274 1.4378 5.1257 12 1 5.7470 1.9808 3.8982 13 6 4.2370 1.3187 -1.2635 14 6 4.4881 -0.1378 -1.5580 15 6 3.6138 -0.8295 -2.3754 16 6 3.8524 -2.1689 -2.6402 17 6 4.9657 -2.7677 -2.0651 18 9 5.2346 -4.0722 -2.2914 19 6 5.7985 -2.0091 -1.2608 20 7 5.5386 -0.7365 -1.0323 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.8667 0.7924 3.2798 29 1 5.1895 1.8427 -1.1844 30 1 3.6476 1.7560 -2.0696 31 1 2.7555 -0.3324 -2.8024 32 1 3.1862 -2.7343 -3.2748 33 1 6.6684 -2.4654 -0.8120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276347854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:40 Heat of formation + Delta-G solvation = -1.915545 kcal Electronic energy + Delta-G solvation = -17195.347514 eV Core-core repulsion = 14363.894365 eV Total energy + Delta-G solvation = -2831.453149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.91080 -40.98606 -37.94104 -33.88562 -33.71659 -33.24221 -31.49037 -27.57214 -27.33295 -24.82309 -24.08561 -22.50878 -21.68396 -18.76286 -18.56112 -18.01414 -17.34704 -16.78192 -16.58095 -15.67452 -15.36260 -15.03586 -14.90661 -14.71591 -14.13931 -14.09924 -13.69494 -13.33811 -13.14734 -12.86388 -12.67273 -12.46861 -12.17162 -11.83301 -11.75886 -11.61386 -11.13939 -10.74943 -10.46789 -10.24721 -9.65632 -8.77869 -7.73549 -5.09632 0.04133 0.27170 1.48899 1.50938 1.57207 2.53383 2.76839 3.12923 3.33385 3.57101 3.81249 3.85715 3.88914 4.06279 4.58207 4.59527 4.65665 4.70938 4.89934 4.92305 4.96321 5.01612 5.02733 5.17992 5.26189 5.51407 5.58073 5.69531 5.77932 5.94065 6.29121 6.41895 7.10428 7.27681 7.94712 8.31926 9.24238 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.008514 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.727110 B = 3287.974013 C = 3799.898465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.174 3.826 4 N -0.596 5.596 5 C -0.240 4.240 6 H 0.066 0.934 7 C -0.052 4.052 8 N -0.912 5.912 9 Si 0.955 3.045 10 H -0.286 1.286 11 H -0.301 1.301 12 H -0.281 1.281 13 C 0.187 3.813 14 C 0.104 3.896 15 C -0.135 4.135 16 C -0.106 4.106 17 C 0.019 3.981 18 F -0.138 7.138 19 C 0.061 3.939 20 N -0.477 5.477 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.243 0.757 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -3.753 -10.910 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.049 3.951 4 N -0.315 5.315 5 C -0.371 4.371 6 H 0.084 0.916 7 C -0.246 4.246 8 N -0.559 5.559 9 Si 0.785 3.215 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.207 1.207 13 C 0.059 3.941 14 C -0.037 4.037 15 C -0.156 4.156 16 C -0.132 4.132 17 C -0.003 4.003 18 F -0.117 7.117 19 C -0.098 4.098 20 N -0.187 5.187 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.179 0.821 32 H 0.189 0.811 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.308 -3.272 -10.222 10.737 hybrid contribution -0.050 -0.799 0.812 1.140 sum 0.258 -4.070 -9.410 10.256 Atomic orbital electron populations 1.21527 0.96370 1.00173 1.00565 1.22043 0.94775 0.99502 0.99845 1.20885 0.81049 0.95051 0.98076 1.44567 1.02420 1.82745 1.01785 1.19442 0.92750 1.40378 0.84498 0.91629 1.25354 0.98362 1.01323 0.99591 1.70311 1.16299 1.44939 1.24355 0.85457 0.77727 0.78129 0.80152 1.21347 1.22784 1.20684 1.20081 0.97155 0.87824 0.89000 1.22963 0.89439 1.00795 0.90515 1.22069 1.00537 0.94135 0.98810 1.21878 0.96087 0.95611 0.99647 1.18826 0.98912 0.79541 1.03065 1.91468 1.93775 1.32908 1.93505 1.23147 0.99989 0.90218 0.96415 1.67595 1.20742 1.10198 1.20153 0.94580 0.92358 0.93757 0.94449 0.93079 0.92216 0.95152 0.94769 0.92436 0.89059 0.82056 0.81053 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.91 71.98 0.71 -3.85 16 2 C -0.12 -5.20 5.57 30.59 0.17 -5.03 16 3 C 0.17 7.79 4.92 86.38 0.42 8.21 16 4 N -0.60 -28.02 2.52 -706.34 -1.78 -29.80 16 5 C -0.24 -12.89 9.73 84.03 0.82 -12.08 16 6 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 7 C -0.05 -2.81 4.99 84.86 0.42 -2.39 16 8 N -0.91 -50.78 8.31 21.65 0.18 -50.60 16 9 Si 0.95 45.36 29.60 68.60 2.03 47.39 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.19 7.16 6.01 85.63 0.51 7.68 16 14 C 0.10 3.84 6.04 42.56 0.26 4.10 16 15 C -0.14 -4.04 7.49 22.36 0.17 -3.87 16 16 C -0.11 -2.89 10.16 22.51 0.23 -2.66 16 17 C 0.02 0.57 7.35 22.47 0.17 0.73 16 18 F -0.14 -3.97 17.28 44.97 0.78 -3.19 16 19 C 0.06 2.07 11.17 84.73 0.95 3.02 16 20 N -0.48 -19.03 10.27 -183.70 -1.89 -20.92 16 21 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.45 5.07 -2.39 -0.01 1.44 16 25 H 0.05 2.69 6.23 -2.39 -0.01 2.67 16 26 H 0.06 3.09 5.88 -2.39 -0.01 3.08 16 27 H 0.03 1.18 7.97 -2.39 -0.02 1.16 16 28 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 29 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 30 H 0.09 2.85 7.85 -2.38 -0.02 2.83 16 31 H 0.16 3.96 7.76 -2.92 -0.02 3.94 16 32 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.17 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -61.02 278.17 5.25 -55.77 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.10 Total: 7.50 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.83 Total: -6.15 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.49 Total: -101.31 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -61.02 5.25 -55.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276347854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.854 kcal (2) G-P(sol) polarization free energy of solvation -61.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds