Wall clock time and date at job start Sun Mar 29 2020 21:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28525 * 124.44292 * 2 1 4 4 C 1.31137 * 109.05849 * 179.97438 * 3 2 1 5 5 C 1.40921 * 105.77532 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23622 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99921 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00087 * 179.72915 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27945 * 8 6 5 10 10 C 1.53004 * 109.46928 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46983 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99624 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00027 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00263 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00327 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47120 * 60.00315 * 16 14 12 18 18 H 1.48505 * 109.47524 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47077 * 300.00283 * 16 14 12 20 20 N 1.28588 * 124.44518 * 180.31484 * 2 1 3 21 21 H 1.08997 * 109.47269 * 90.02294 * 1 2 3 22 22 H 1.08996 * 109.46991 * 210.02314 * 1 2 3 23 23 H 1.09005 * 109.46910 * 330.01939 * 1 2 3 24 24 H 1.07998 * 127.10685 * 180.02562 * 4 3 2 25 25 H 0.97000 * 119.99736 * 0.27219 * 8 6 5 26 26 H 1.08992 * 109.46803 * 299.99362 * 9 8 6 27 27 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 28 28 H 1.09007 * 109.46621 * 299.99773 * 10 9 8 29 29 H 1.08997 * 109.46991 * 59.99522 * 10 9 8 30 30 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 31 31 H 1.08997 * 109.47123 * 59.99717 * 11 10 9 32 32 H 0.96994 * 120.00789 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7120 0.0006 5 6 3.4659 -0.6971 0.0003 6 6 4.6487 -1.5834 0.0002 7 8 5.7664 -1.1054 0.0008 8 7 4.4881 -2.9216 0.0055 9 6 5.6605 -3.8000 0.0116 10 6 5.2037 -5.2603 0.0174 11 6 6.4281 -6.1777 0.0231 12 6 5.9781 -7.6159 0.0295 13 1 4.9242 -7.8519 0.0299 14 6 6.9118 -8.6303 0.0348 15 7 8.1951 -8.3429 0.0348 16 14 6.3541 -10.4131 0.0420 17 1 5.5394 -10.6818 -1.1703 18 1 7.5425 -11.3036 0.0476 19 1 5.5369 -10.6712 1.2548 20 7 2.1923 -1.0604 -0.0058 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5136 24 1 4.3130 1.3696 0.0011 25 1 3.5962 -3.3030 0.0054 26 1 6.2611 -3.6105 -0.8780 27 1 6.2576 -3.6029 0.9019 28 1 4.6032 -5.4495 0.9073 29 1 4.6063 -5.4576 -0.8727 30 1 7.0281 -5.9883 -0.8669 31 1 7.0258 -5.9804 0.9130 32 1 8.8521 -9.0565 0.0382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284081322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:54 Heat of formation + Delta-G solvation = 33.196668 kcal Electronic energy + Delta-G solvation = -15816.267839 eV Core-core repulsion = 13006.257232 eV Total energy + Delta-G solvation = -2810.010607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.71925 -40.60195 -37.01375 -35.25474 -34.79493 -33.88014 -32.85593 -29.38310 -28.33748 -25.76185 -24.19939 -23.11659 -22.30778 -21.37124 -18.96399 -18.43147 -18.05251 -17.90657 -16.86597 -16.66818 -16.41170 -15.77073 -15.37466 -15.12013 -14.25037 -13.89577 -13.77347 -13.64105 -13.48578 -13.05351 -12.71162 -12.55593 -12.40658 -12.15328 -11.71354 -11.67043 -11.56431 -11.31296 -11.12609 -10.54058 -10.53030 -10.13345 -8.17894 -6.29315 0.16903 0.85205 1.25174 1.42815 1.45813 1.53638 2.05013 2.12138 2.43725 2.85527 3.15781 3.73340 3.97200 4.16540 4.22250 4.31145 4.32578 4.47674 4.56150 4.67403 4.90413 4.95121 4.96124 5.17702 5.34687 5.51809 5.53186 5.72675 5.85877 6.23762 6.38921 6.87806 6.97923 7.06979 7.40102 8.93996 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.046941 B = 0.003751 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.346537 B = 7463.788555 C = 8029.075231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.133 5.133 3 N -0.297 5.297 4 C 0.031 3.969 5 C -0.066 4.066 6 C 0.605 3.395 7 O -0.564 6.564 8 N -0.700 5.700 9 C 0.128 3.872 10 C -0.103 4.103 11 C 0.024 3.976 12 C -0.543 4.543 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.266 1.266 20 N -0.252 5.252 21 H 0.113 0.887 22 H 0.123 0.877 23 H 0.127 0.873 24 H 0.224 0.776 25 H 0.416 0.584 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.067 0.933 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.943 16.373 -0.010 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.038 5.038 3 N -0.138 5.138 4 C -0.152 4.152 5 C -0.227 4.227 6 C 0.389 3.611 7 O -0.442 6.442 8 N -0.351 5.351 9 C 0.005 3.995 10 C -0.141 4.141 11 C -0.014 4.014 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.191 1.191 20 N -0.103 5.103 21 H 0.131 0.869 22 H 0.141 0.859 23 H 0.145 0.855 24 H 0.240 0.760 25 H 0.252 0.748 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.348 16.612 -0.013 24.751 hybrid contribution 0.846 -1.105 -0.019 1.391 sum -17.503 15.508 -0.032 23.384 Atomic orbital electron populations 1.22824 0.66681 1.08193 1.07287 1.48672 1.10758 0.98494 1.45913 1.74031 1.03726 1.15818 1.20187 1.25159 0.95062 0.93350 1.01586 1.22840 0.91133 0.95198 1.13527 1.16885 0.86166 0.81877 0.76182 1.90795 1.25282 1.75987 1.52123 1.45858 1.11299 1.04951 1.73016 1.21387 0.87182 0.89354 1.01564 1.21614 0.99132 0.91232 1.02115 1.18937 0.93346 0.93763 0.95311 1.21659 0.93428 0.92410 1.50596 0.91634 1.26006 0.94914 1.04323 0.94775 1.70097 1.01528 1.34239 1.51616 0.85479 0.77670 0.78514 0.79240 1.19059 1.21147 1.19066 1.74347 1.02767 1.16461 1.16696 0.86862 0.85861 0.85489 0.75985 0.74753 0.92257 0.92249 0.91453 0.91467 0.98679 0.98683 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.55 127.77 1.48 2.01 16 2 N -0.13 -2.42 4.35 -206.54 -0.90 -3.32 16 3 N -0.30 -6.20 12.01 -56.16 -0.67 -6.87 16 4 C 0.03 0.70 12.04 85.45 1.03 1.73 16 5 C -0.07 -1.74 7.21 42.24 0.30 -1.44 16 6 C 0.60 19.13 7.83 86.77 0.68 19.81 16 7 O -0.56 -21.38 16.95 -3.91 -0.07 -21.44 16 8 N -0.70 -21.12 5.55 -466.01 -2.59 -23.71 16 9 C 0.13 4.57 5.67 86.38 0.49 5.06 16 10 C -0.10 -4.01 5.27 30.60 0.16 -3.85 16 11 C 0.02 1.25 4.97 29.85 0.15 1.40 16 12 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 13 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 15 N -0.93 -57.08 13.29 21.44 0.28 -56.79 16 16 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 N -0.25 -5.77 11.84 -48.17 -0.57 -6.34 16 21 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 22 H 0.12 0.38 8.14 -2.39 -0.02 0.37 16 23 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 24 H 0.22 4.08 8.06 -2.91 -0.02 4.05 16 25 H 0.42 10.68 8.24 -92.71 -0.76 9.92 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -72.87 289.58 2.86 -70.00 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.37 Total: 7.74 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.98 Total: -5.08 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.44 Total: -97.03 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.07 Total: -21.44 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.87 2.86 -70.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284081322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.198 kcal (2) G-P(sol) polarization free energy of solvation -72.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds