Wall clock time and date at job start Sun Mar 29 2020 21:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.38244 * 120.40074 * 269.72284 * 14 13 12 16 16 N 1.31846 * 120.81631 * 179.68386 * 15 14 13 17 17 C 1.31872 * 121.75184 * 0.62540 * 16 15 14 18 18 C 1.38426 * 120.72478 * 359.66440 * 17 16 15 19 19 F 1.35105 * 120.43997 * 180.02562 * 18 17 16 20 20 C 1.38581 * 120.41043 * 89.99878 * 14 13 12 21 21 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 24 24 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 25 25 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 26 26 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 27 27 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 28 28 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 29 29 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 30 30 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 31 31 H 1.07993 * 119.58822 * 359.97438 * 15 14 13 32 32 H 1.07994 * 119.63963 * 179.67890 * 17 16 15 33 33 H 1.08006 * 120.79885 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 6 7.9738 -5.4946 -0.0017 15 6 8.1943 -6.1597 1.1900 16 7 8.5945 -7.4160 1.1983 17 6 8.8115 -8.0826 0.0814 18 6 8.6178 -7.4812 -1.1502 19 9 8.8414 -8.1697 -2.2910 20 6 8.1903 -6.1607 -1.1976 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6809 0.8905 23 1 3.8752 -0.6798 -0.8895 24 1 3.6584 -3.1502 -0.8903 25 1 3.6578 -3.1506 0.8896 26 1 5.9149 -2.1230 0.8899 27 1 5.9148 -2.1228 -0.8900 28 1 5.6656 -4.5375 -0.7825 29 1 7.8868 -3.5564 -0.8899 30 1 7.8861 -3.5576 0.8901 31 1 8.0322 -5.6454 2.1256 32 1 9.1439 -9.1091 0.1280 33 1 8.0300 -5.6649 -2.1436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308894113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:18 Heat of formation + Delta-G solvation = -24.684267 kcal Electronic energy + Delta-G solvation = -15572.873037 eV Core-core repulsion = 12740.432562 eV Total energy + Delta-G solvation = -2832.440475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.27685 -40.42562 -36.80819 -34.12928 -32.70666 -31.69130 -30.74726 -27.41362 -25.18412 -23.99951 -22.33364 -21.97715 -20.12734 -17.67932 -17.64412 -17.12970 -16.70544 -16.12325 -15.62979 -14.87340 -14.47564 -14.22568 -14.10337 -13.53258 -13.49099 -13.36869 -12.95372 -12.61926 -11.96252 -11.84383 -11.75065 -10.99181 -10.81830 -10.21737 -9.96963 -9.96462 -9.76244 -9.61603 -9.21518 -9.17382 -8.54629 -8.41749 -6.04691 -4.02784 0.58882 0.74306 3.27804 3.29287 3.36954 3.40118 3.66373 4.09438 4.23950 4.39714 4.44246 4.47073 4.59457 4.80178 5.12809 5.29012 5.40089 5.47909 5.49846 5.59584 5.65932 5.82281 6.09220 6.29466 6.46057 6.51076 6.86748 7.04110 7.30964 7.34446 7.43996 7.50483 7.79092 8.54053 9.00759 9.57629 11.08880 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.003485 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.172944 B = 8031.657847 C = 8113.830588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.685 5.685 13 C 0.098 3.902 14 C -0.098 4.098 15 C 0.111 3.889 16 N -0.458 5.458 17 C 0.070 3.930 18 C 0.047 3.953 19 F -0.132 7.132 20 C -0.106 4.106 21 H 0.263 0.737 22 H 0.016 0.984 23 H 0.009 0.991 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.341 0.659 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.913 -11.927 -1.482 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.138 4.138 11 C -0.072 4.072 12 N -0.316 5.316 13 C -0.032 4.032 14 C -0.101 4.101 15 C -0.047 4.047 16 N -0.165 5.165 17 C -0.089 4.089 18 C 0.025 3.975 19 F -0.110 7.110 20 C -0.133 4.133 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.159 0.841 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.184 0.816 32 H 0.183 0.817 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 19.844 -12.310 -0.029 23.352 hybrid contribution 0.382 1.462 -2.071 2.564 sum 20.226 -10.847 -2.099 23.047 Atomic orbital electron populations 1.69924 1.06311 1.26864 1.51226 1.25052 0.94747 0.99202 0.94621 0.86757 0.80349 0.83614 0.78415 1.20388 1.21383 1.19025 1.21147 0.89511 0.94482 1.50664 0.91026 1.19541 0.97205 0.92160 0.96137 1.21454 0.90857 0.99799 1.01709 1.22201 0.97858 0.86982 1.00144 1.60589 1.05148 1.15671 1.50229 1.20863 0.89789 0.90366 1.02175 1.20827 0.98401 0.97908 0.92933 1.22842 0.93811 0.89823 0.98243 1.67785 1.10700 1.08690 1.29321 1.22917 0.98687 1.01000 0.86277 1.18795 1.03618 0.91579 0.83485 1.91529 1.92329 1.78953 1.48221 1.21619 0.98548 0.93002 1.00144 0.92749 0.96560 0.97280 0.93020 0.91796 0.91128 0.95525 0.84137 0.93930 0.89278 0.81621 0.81712 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.92 5.41 -26.73 -0.14 -2.07 16 11 C 0.06 0.84 5.69 -3.82 -0.02 0.82 16 12 N -0.69 -8.63 6.49 -115.06 -0.75 -9.38 16 13 C 0.10 0.96 5.84 -4.98 -0.03 0.93 16 14 C -0.10 -0.94 5.41 -104.49 -0.57 -1.51 16 15 C 0.11 1.11 10.86 -17.54 -0.19 0.92 16 16 N -0.46 -4.97 10.36 -13.20 -0.14 -5.11 16 17 C 0.07 0.66 11.17 -17.46 -0.20 0.47 16 18 C 0.05 0.45 7.35 -39.28 -0.29 0.16 16 19 F -0.13 -1.32 17.28 2.25 0.04 -1.28 16 20 C -0.11 -0.98 9.85 -39.22 -0.39 -1.37 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 23 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.34 4.15 8.72 -39.29 -0.34 3.81 16 29 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 31 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -31.20 289.77 -7.23 -38.43 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.50 Total: -1.30 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -2.36 Total: -15.45 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.11 Total: -41.73 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.20 -7.23 -38.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308894113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.746 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds