Wall clock time and date at job start Sun Mar 29 2020 21:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.38244 * 120.40074 * 269.72284 * 14 13 12 16 16 N 1.31846 * 120.81631 * 179.68386 * 15 14 13 17 17 C 1.31872 * 121.75184 * 0.62540 * 16 15 14 18 18 C 1.38426 * 120.72478 * 359.66440 * 17 16 15 19 19 F 1.35105 * 120.43997 * 180.02562 * 18 17 16 20 20 C 1.38581 * 120.41043 * 89.99878 * 14 13 12 21 21 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 24 24 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 25 25 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 26 26 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 27 27 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 28 28 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 29 29 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 30 30 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 31 31 H 1.07993 * 119.58822 * 359.97438 * 15 14 13 32 32 H 1.07994 * 119.63963 * 179.67890 * 17 16 15 33 33 H 1.08006 * 120.79885 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 6 7.9738 -5.4946 -0.0017 15 6 8.1943 -6.1597 1.1900 16 7 8.5945 -7.4160 1.1983 17 6 8.8115 -8.0826 0.0814 18 6 8.6178 -7.4812 -1.1502 19 9 8.8414 -8.1697 -2.2910 20 6 8.1903 -6.1607 -1.1976 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6809 0.8905 23 1 3.8752 -0.6798 -0.8895 24 1 3.6584 -3.1502 -0.8903 25 1 3.6578 -3.1506 0.8896 26 1 5.9149 -2.1230 0.8899 27 1 5.9148 -2.1228 -0.8900 28 1 5.6656 -4.5375 -0.7825 29 1 7.8868 -3.5564 -0.8899 30 1 7.8861 -3.5576 0.8901 31 1 8.0322 -5.6454 2.1256 32 1 9.1439 -9.1091 0.1280 33 1 8.0300 -5.6649 -2.1436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308894113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:18 Heat of formation + Delta-G solvation = -45.787019 kcal Electronic energy + Delta-G solvation = -15573.788121 eV Core-core repulsion = 12740.432562 eV Total energy + Delta-G solvation = -2833.355559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.02230 -41.15868 -37.89236 -35.68545 -34.18725 -32.85751 -31.88439 -28.84884 -26.39205 -24.75978 -23.75745 -22.85720 -21.78954 -18.92746 -18.39208 -18.37725 -17.82157 -16.87888 -16.72064 -16.40020 -15.59761 -15.59312 -15.05415 -14.78689 -14.50636 -14.27600 -14.15073 -13.81271 -13.53555 -13.30465 -12.81078 -12.55586 -12.42308 -11.79210 -11.59171 -11.46942 -11.27710 -10.86164 -10.75109 -10.66034 -9.95261 -9.37000 -8.28224 -6.32854 -0.13947 0.01948 1.37421 1.40064 1.52173 2.37950 2.52763 2.94310 3.07247 3.30966 3.46116 3.67166 3.72118 3.88879 4.07966 4.26029 4.32863 4.45722 4.68190 4.73532 4.79722 4.81713 4.92302 5.01023 5.07928 5.14191 5.53543 5.58884 5.63299 5.68387 6.03248 6.30515 6.39981 6.76197 6.77717 7.31915 8.88949 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.003485 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.172944 B = 8031.657847 C = 8113.830588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.694 5.694 13 C 0.102 3.898 14 C -0.101 4.101 15 C 0.104 3.896 16 N -0.480 5.480 17 C 0.068 3.932 18 C 0.037 3.963 19 F -0.135 7.135 20 C -0.105 4.105 21 H 0.266 0.734 22 H 0.023 0.977 23 H 0.020 0.980 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.342 0.658 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.185 0.815 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.360 -11.068 -1.699 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.058 4.058 12 N -0.325 5.325 13 C -0.027 4.027 14 C -0.103 4.103 15 C -0.054 4.054 16 N -0.187 5.187 17 C -0.090 4.090 18 C 0.016 3.984 19 F -0.114 7.114 20 C -0.131 4.131 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.160 0.840 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.194 0.806 32 H 0.202 0.798 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 22.316 -11.476 -0.246 25.095 hybrid contribution -0.439 1.066 -2.008 2.315 sum 21.877 -10.409 -2.254 24.331 Atomic orbital electron populations 1.70094 1.08495 1.28191 1.52822 1.26123 0.95677 1.03874 0.94094 0.85566 0.79567 0.77715 0.79222 1.19109 1.21177 1.16497 1.21555 0.92514 0.92949 1.50290 0.95473 1.19494 0.93548 0.95107 0.96677 1.21281 0.94347 0.96848 1.00658 1.21909 0.94274 0.88578 1.01036 1.60494 1.07147 1.14212 1.50619 1.20879 0.87766 0.90649 1.03374 1.20779 0.98808 0.97856 0.92875 1.23105 0.93454 0.89790 0.99017 1.67820 1.11658 1.09255 1.29983 1.23258 0.97946 1.01839 0.85981 1.18883 1.04165 0.91896 0.83474 1.91521 1.92431 1.79064 1.48357 1.21831 0.97662 0.92879 1.00775 0.92542 0.95903 0.96119 0.93703 0.93400 0.90451 0.94376 0.83963 0.92511 0.88244 0.80563 0.79766 0.82197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.63 13.96 21.45 0.30 -60.33 16 2 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 3 Si 0.96 43.84 27.47 68.60 1.88 45.72 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.54 -31.14 9.66 25.60 0.25 -30.89 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.49 5.41 30.59 0.17 -3.33 16 11 C 0.07 1.92 5.69 86.30 0.49 2.41 16 12 N -0.69 -15.82 6.49 -517.93 -3.36 -19.18 16 13 C 0.10 1.71 5.84 85.56 0.50 2.20 16 14 C -0.10 -1.72 5.41 -19.78 -0.11 -1.83 16 15 C 0.10 1.91 10.86 84.69 0.92 2.83 16 16 N -0.48 -9.79 10.36 -195.66 -2.03 -11.82 16 17 C 0.07 1.20 11.17 84.73 0.95 2.14 16 18 C 0.04 0.66 7.35 22.47 0.17 0.83 16 19 F -0.13 -2.52 17.28 44.97 0.78 -1.74 16 20 C -0.10 -1.72 9.85 22.50 0.22 -1.50 16 21 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 22 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 23 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.34 7.65 8.72 -89.69 -0.78 6.87 16 29 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 31 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -67.83 289.77 1.97 -65.86 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.27 Total: 8.59 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.13 Total: -27.11 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -5.09 Total: -91.33 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -67.83 1.97 -65.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308894113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.074 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds