Wall clock time and date at job start Sun Mar 29 2020 23:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47037 * 270.00170 * 3 2 1 5 5 H 1.48497 * 109.46851 * 30.00355 * 3 2 1 6 6 H 1.48501 * 109.46812 * 150.00274 * 3 2 1 7 7 C 1.37888 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99541 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00324 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.30103 * 120.00214 * 114.42261 * 10 9 7 12 12 O 1.35085 * 120.00222 * 183.91827 * 11 10 9 13 13 N 1.37341 * 119.99471 * 3.64424 * 11 10 9 14 14 C 1.46506 * 119.99617 * 174.72228 * 13 11 10 15 15 C 1.53005 * 109.46785 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.63881 * 305.41828 * 15 14 13 17 17 C 1.53028 * 109.64282 * 66.05281 * 15 14 13 18 18 C 1.50063 * 110.14382 * 169.11848 * 17 15 14 19 19 C 1.29442 * 124.08008 * 342.86755 * 18 17 15 20 20 C 1.50066 * 124.07149 * 0.47052 * 19 18 17 21 21 C 1.53022 * 110.15169 * 342.86808 * 20 19 18 22 22 H 0.96994 * 120.00230 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46823 * 59.99748 * 9 7 2 24 24 H 1.09003 * 109.47336 * 300.00573 * 9 7 2 25 25 H 0.96707 * 114.00317 * 359.72291 * 12 11 10 26 26 H 0.97002 * 120.00136 * 354.71045 * 13 11 10 27 27 H 1.09004 * 109.46759 * 299.99085 * 14 13 11 28 28 H 1.08991 * 109.47273 * 59.99661 * 14 13 11 29 29 H 1.08998 * 109.35342 * 289.32544 * 17 15 14 30 30 H 1.08997 * 109.35809 * 48.90837 * 17 15 14 31 31 H 1.08003 * 117.95851 * 162.88952 * 18 17 15 32 32 H 1.07995 * 117.96297 * 180.48785 * 19 18 17 33 33 H 1.09006 * 109.35693 * 222.65885 * 20 19 18 34 34 H 1.09004 * 109.24585 * 103.00837 * 20 19 18 35 35 H 1.09003 * 109.64053 * 289.75828 * 21 20 19 36 36 H 1.08997 * 109.81961 * 169.22380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.6556 -3.0326 -1.0287 12 8 5.0370 -4.3280 -1.0640 13 7 4.9550 -2.1997 -2.0788 14 6 5.7916 -2.6819 -3.1807 15 6 5.9699 -1.5656 -4.2118 16 1 4.9931 -1.2010 -4.5295 17 6 6.7760 -0.4201 -3.5957 18 6 7.1847 0.5553 -4.6603 19 6 7.1764 0.2915 -5.9276 20 6 6.7473 -1.0234 -6.5098 21 6 6.7395 -2.1027 -5.4251 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 4.7817 -4.8348 -0.2809 26 1 4.6124 -1.2922 -2.0911 27 1 6.7665 -2.9785 -2.7937 28 1 5.3118 -3.5390 -3.6529 29 1 6.1656 0.0918 -2.8517 30 1 7.6667 -0.8233 -3.1139 31 1 7.5061 1.5386 -4.3498 32 1 7.4986 1.0657 -6.6081 33 1 7.4396 -1.3113 -7.3010 34 1 5.7449 -0.9220 -6.9259 35 1 7.7635 -2.3377 -5.1347 36 1 6.2499 -3.0010 -5.8012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331173138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:38 Heat of formation + Delta-G solvation = -9.718429 kcal Electronic energy + Delta-G solvation = -16893.376515 eV Core-core repulsion = 14185.045313 eV Total energy + Delta-G solvation = -2708.331202 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.25433 -38.22990 -35.29583 -33.78706 -32.22379 -31.02372 -30.39742 -27.57291 -25.28393 -23.18751 -22.50939 -21.18065 -20.23071 -18.04127 -16.85419 -16.71692 -16.30643 -15.86988 -14.99718 -14.81554 -14.28422 -14.04023 -13.69352 -13.55160 -12.96294 -12.77079 -12.48683 -12.20243 -12.10738 -12.00339 -11.96271 -10.97469 -10.81300 -10.60609 -10.53415 -10.34381 -10.23975 -9.59889 -9.25531 -9.08713 -8.67577 -8.30530 -7.19681 -6.04337 -4.01211 2.19634 3.25445 3.34661 3.36576 3.37741 3.57520 4.41327 4.51004 4.59378 4.65665 4.94904 5.10760 5.15690 5.23573 5.26806 5.40648 5.46329 5.63210 5.72695 5.75917 5.85609 5.88041 5.97324 6.00135 6.10568 6.31652 6.55573 6.72865 6.85252 7.15685 7.31611 7.61907 7.78188 8.24818 8.58070 9.05143 9.26328 9.58713 11.09186 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.006922 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.201640 B = 4044.109267 C = 4993.464542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.507 4.507 8 H 0.076 0.924 9 C 0.180 3.820 10 N -0.629 5.629 11 C 0.538 3.462 12 O -0.489 6.489 13 N -0.746 5.746 14 C 0.135 3.865 15 C -0.102 4.102 16 H 0.080 0.920 17 C -0.089 4.089 18 C -0.150 4.150 19 C -0.163 4.163 20 C -0.090 4.090 21 C -0.110 4.110 22 H 0.263 0.737 23 H 0.031 0.969 24 H -0.019 1.019 25 H 0.416 0.584 26 H 0.418 0.582 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.103 -2.309 -11.817 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.546 4.546 8 H 0.095 0.905 9 C 0.052 3.948 10 N -0.375 5.375 11 C 0.223 3.777 12 O -0.286 6.286 13 N -0.403 5.403 14 C 0.009 3.991 15 C -0.121 4.121 16 H 0.099 0.901 17 C -0.126 4.126 18 C -0.168 4.168 19 C -0.181 4.181 20 C -0.127 4.127 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.048 0.952 24 H -0.002 1.002 25 H 0.271 0.729 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.998 -2.508 -11.625 19.934 hybrid contribution 0.151 1.681 -0.195 1.699 sum 16.148 -0.827 -11.821 20.030 Atomic orbital electron populations 1.69893 1.06136 1.26807 1.51110 1.24941 0.94769 0.98818 0.94922 0.86880 0.80536 0.84019 0.78511 1.20229 1.20997 1.19024 1.21117 0.88779 0.94668 1.50013 0.90550 1.19709 0.96346 0.84375 0.94391 1.72441 1.22631 1.20560 1.21859 1.19861 0.90091 0.82833 0.84877 1.84488 1.78034 1.18134 1.47918 1.44978 1.57857 1.15560 1.21904 1.21250 0.94645 0.95931 0.87321 1.21474 0.99905 0.95437 0.95275 0.90129 1.20527 1.00007 0.95134 0.96891 1.22089 1.00445 0.99441 0.94792 1.22021 1.01761 0.98158 0.96144 1.20436 1.01501 0.92871 0.97872 1.21558 1.00586 0.97914 0.94748 0.92657 0.95164 1.00159 0.72864 0.73876 0.92551 0.92322 0.90865 0.90558 0.88081 0.88236 0.91157 0.90856 0.91560 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -15.19 9.94 -34.44 -0.34 -15.54 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 9 C 0.18 4.62 5.14 -5.20 -0.03 4.60 16 10 N -0.63 -14.64 10.48 -63.71 -0.67 -15.31 16 11 C 0.54 10.43 8.74 -88.56 -0.77 9.66 16 12 O -0.49 -7.71 12.91 -16.96 -0.22 -7.93 16 13 N -0.75 -12.84 5.34 -62.52 -0.33 -13.17 16 14 C 0.13 1.78 5.14 -4.04 -0.02 1.76 16 15 C -0.10 -1.18 2.27 -90.40 -0.21 -1.39 16 16 H 0.08 1.04 8.13 -51.93 -0.42 0.61 16 17 C -0.09 -1.04 5.20 -28.18 -0.15 -1.18 16 18 C -0.15 -1.63 9.80 -35.90 -0.35 -1.98 16 19 C -0.16 -1.62 9.80 -35.90 -0.35 -1.97 16 20 C -0.09 -0.81 6.12 -28.18 -0.17 -0.98 16 21 C -0.11 -1.04 5.31 -26.52 -0.14 -1.18 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 24 H -0.02 -0.45 4.78 -51.93 -0.25 -0.70 16 25 H 0.42 5.17 8.97 45.56 0.41 5.58 16 26 H 0.42 7.67 5.15 -40.82 -0.21 7.46 16 27 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 30 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -33.36 294.93 -7.93 -41.28 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.62 Total: 7.46 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.63 Total: -6.31 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.23 Total: -55.92 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.22 Total: -7.93 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.36 -7.93 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331173138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.565 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds