Wall clock time and date at job start Sun Mar 29 2020 23:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47037 * 270.00170 * 3 2 1 5 5 H 1.48497 * 109.46851 * 30.00355 * 3 2 1 6 6 H 1.48501 * 109.46812 * 150.00274 * 3 2 1 7 7 C 1.37888 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99541 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00324 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.30103 * 120.00214 * 114.42261 * 10 9 7 12 12 O 1.35085 * 120.00222 * 183.91827 * 11 10 9 13 13 N 1.37341 * 119.99471 * 3.64424 * 11 10 9 14 14 C 1.46506 * 119.99617 * 174.72228 * 13 11 10 15 15 C 1.53005 * 109.46785 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.63881 * 305.41828 * 15 14 13 17 17 C 1.53028 * 109.64282 * 66.05281 * 15 14 13 18 18 C 1.50063 * 110.14382 * 169.11848 * 17 15 14 19 19 C 1.29442 * 124.08008 * 342.86755 * 18 17 15 20 20 C 1.50066 * 124.07149 * 0.47052 * 19 18 17 21 21 C 1.53022 * 110.15169 * 342.86808 * 20 19 18 22 22 H 0.96994 * 120.00230 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46823 * 59.99748 * 9 7 2 24 24 H 1.09003 * 109.47336 * 300.00573 * 9 7 2 25 25 H 0.96707 * 114.00317 * 359.72291 * 12 11 10 26 26 H 0.97002 * 120.00136 * 354.71045 * 13 11 10 27 27 H 1.09004 * 109.46759 * 299.99085 * 14 13 11 28 28 H 1.08991 * 109.47273 * 59.99661 * 14 13 11 29 29 H 1.08998 * 109.35342 * 289.32544 * 17 15 14 30 30 H 1.08997 * 109.35809 * 48.90837 * 17 15 14 31 31 H 1.08003 * 117.95851 * 162.88952 * 18 17 15 32 32 H 1.07995 * 117.96297 * 180.48785 * 19 18 17 33 33 H 1.09006 * 109.35693 * 222.65885 * 20 19 18 34 34 H 1.09004 * 109.24585 * 103.00837 * 20 19 18 35 35 H 1.09003 * 109.64053 * 289.75828 * 21 20 19 36 36 H 1.08997 * 109.81961 * 169.22380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.6556 -3.0326 -1.0287 12 8 5.0370 -4.3280 -1.0640 13 7 4.9550 -2.1997 -2.0788 14 6 5.7916 -2.6819 -3.1807 15 6 5.9699 -1.5656 -4.2118 16 1 4.9931 -1.2010 -4.5295 17 6 6.7760 -0.4201 -3.5957 18 6 7.1847 0.5553 -4.6603 19 6 7.1764 0.2915 -5.9276 20 6 6.7473 -1.0234 -6.5098 21 6 6.7395 -2.1027 -5.4251 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 4.7817 -4.8348 -0.2809 26 1 4.6124 -1.2922 -2.0911 27 1 6.7665 -2.9785 -2.7937 28 1 5.3118 -3.5390 -3.6529 29 1 6.1656 0.0918 -2.8517 30 1 7.6667 -0.8233 -3.1139 31 1 7.5061 1.5386 -4.3498 32 1 7.4986 1.0657 -6.6081 33 1 7.4396 -1.3113 -7.3010 34 1 5.7449 -0.9220 -6.9259 35 1 7.7635 -2.3377 -5.1347 36 1 6.2499 -3.0010 -5.8012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331173138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:38 Heat of formation + Delta-G solvation = -36.680260 kcal Electronic energy + Delta-G solvation = -16894.545668 eV Core-core repulsion = 14185.045313 eV Total energy + Delta-G solvation = -2709.500355 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43168 -39.38364 -36.72108 -35.41412 -34.15155 -31.98422 -31.46916 -29.52326 -26.39386 -24.61969 -23.81940 -22.29157 -21.68496 -19.04297 -18.85796 -18.07165 -17.81201 -17.01812 -16.36086 -16.17464 -15.89475 -15.18521 -14.77915 -14.61838 -14.60609 -14.01561 -13.89515 -13.81408 -13.19947 -12.92837 -12.89333 -12.88030 -12.49958 -12.18267 -11.75238 -11.66017 -11.47077 -11.09446 -10.88731 -10.79855 -10.08577 -9.86530 -8.83574 -8.32076 -6.36834 1.31124 1.35372 1.41810 1.46960 1.89585 2.05000 2.31920 3.00565 3.38308 3.68051 3.76424 3.92518 4.25231 4.33989 4.38276 4.45882 4.54330 4.67701 4.74435 4.79704 4.83759 4.87557 5.03011 5.07626 5.12249 5.15489 5.31600 5.46027 5.53353 5.78331 6.02265 6.07400 6.08590 6.31292 6.66740 6.81737 7.26100 7.67439 8.85219 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.006922 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.201640 B = 4044.109267 C = 4993.464542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.250 1.250 7 C -0.524 4.524 8 H 0.022 0.978 9 C 0.193 3.807 10 N -0.677 5.677 11 C 0.556 3.444 12 O -0.473 6.473 13 N -0.745 5.745 14 C 0.134 3.866 15 C -0.097 4.097 16 H 0.066 0.934 17 C -0.088 4.088 18 C -0.169 4.169 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.106 4.106 22 H 0.269 0.731 23 H 0.022 0.978 24 H -0.001 1.001 25 H 0.431 0.569 26 H 0.412 0.588 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.495 -1.652 -13.406 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.563 4.563 8 H 0.041 0.959 9 C 0.064 3.936 10 N -0.426 5.426 11 C 0.241 3.759 12 O -0.271 6.271 13 N -0.400 5.400 14 C 0.010 3.990 15 C -0.116 4.116 16 H 0.084 0.916 17 C -0.125 4.125 18 C -0.187 4.187 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.144 4.144 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.016 0.984 25 H 0.290 0.710 26 H 0.254 0.746 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.428 -1.905 -13.247 22.776 hybrid contribution -0.590 1.302 0.215 1.445 sum 17.839 -0.604 -13.032 22.100 Atomic orbital electron populations 1.70058 1.08280 1.28340 1.52180 1.25960 0.95714 1.03395 0.93950 0.85654 0.79370 0.77914 0.79713 1.18160 1.20358 1.17366 1.21343 0.91362 0.92925 1.50620 0.95917 1.19376 0.93291 0.86386 0.94593 1.72367 1.26350 1.19425 1.24476 1.20004 0.87825 0.83763 0.84279 1.84508 1.77375 1.16431 1.48831 1.45159 1.57578 1.15035 1.22214 1.21463 0.94416 0.96618 0.86518 1.21426 0.99604 0.94905 0.95693 0.91584 1.20491 0.99839 0.95256 0.96906 1.22126 1.01868 0.99652 0.95047 1.22269 1.00427 0.98896 0.96040 1.20504 1.02036 0.92215 0.98140 1.21553 1.00699 0.98367 0.93748 0.92240 0.96051 0.98378 0.71045 0.74605 0.91233 0.91911 0.92631 0.90113 0.87683 0.86922 0.89177 0.90849 0.90728 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.95 44.58 27.47 68.60 1.88 46.47 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.37 16 7 C -0.52 -32.43 9.94 25.60 0.25 -32.18 16 8 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 9 C 0.19 9.94 5.14 85.63 0.44 10.38 16 10 N -0.68 -31.65 10.48 -469.75 -4.92 -36.57 16 11 C 0.56 20.98 8.74 179.63 1.57 22.55 16 12 O -0.47 -14.02 12.91 -83.60 -1.08 -15.10 16 13 N -0.74 -24.67 5.34 -462.19 -2.47 -27.14 16 14 C 0.13 3.27 5.14 86.38 0.44 3.71 16 15 C -0.10 -2.07 2.27 -10.65 -0.02 -2.09 16 16 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 17 C -0.09 -1.91 5.20 29.66 0.15 -1.75 16 18 C -0.17 -3.34 9.80 27.04 0.27 -3.08 16 19 C -0.16 -2.74 9.80 27.04 0.27 -2.47 16 20 C -0.09 -1.38 6.12 29.66 0.18 -1.20 16 21 C -0.11 -1.69 5.31 30.73 0.16 -1.52 16 22 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 23 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 24 H 0.00 -0.06 4.78 -2.39 -0.01 -0.07 16 25 H 0.43 10.02 8.97 -74.05 -0.66 9.35 16 26 H 0.41 14.73 5.15 -92.71 -0.48 14.25 16 27 H 0.07 1.55 8.09 -2.38 -0.02 1.53 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.38 7.54 -2.39 -0.02 1.37 16 30 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.11 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.61 294.93 -2.23 -75.84 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.12 Total: 23.96 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.18 Total: -6.76 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -7.09 Total: -124.40 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.08 Total: -15.10 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -73.61 -2.23 -75.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331173138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.160 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds