Wall clock time and date at job start Sun Mar 29 2020 22:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00459 * 2 1 4 4 H 1.48501 * 109.47127 * 239.99946 * 3 2 1 5 5 H 1.48497 * 109.46768 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47269 * 119.99911 * 3 2 1 7 7 C 1.38959 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99962 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00010 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99990 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46914 * 180.02562 * 12 10 9 14 14 C 1.46780 * 111.00060 * 65.78635 * 13 12 10 15 15 C 1.53010 * 109.89192 * 188.89694 * 14 13 12 16 16 C 1.53331 * 109.19602 * 297.73404 * 15 14 13 17 17 C 1.53479 * 108.56487 * 54.29308 * 16 15 14 18 18 C 1.52796 * 117.79007 * 93.83327 * 17 16 15 19 19 C 1.52763 * 117.94971 * 162.85251 * 17 16 15 20 20 C 1.47058 * 110.99882 * 189.99756 * 13 12 10 21 21 H 0.96998 * 119.99190 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99922 * 0.02562 * 9 7 2 23 23 H 1.08994 * 109.47395 * 60.00130 * 12 10 9 24 24 H 1.09003 * 109.46811 * 299.99731 * 12 10 9 25 25 H 1.09000 * 109.39928 * 309.02025 * 14 13 12 26 26 H 1.08998 * 109.40284 * 68.85109 * 14 13 12 27 27 H 1.09000 * 109.51723 * 57.64876 * 15 14 13 28 28 H 1.09002 * 109.51817 * 177.81884 * 15 14 13 29 29 H 1.09003 * 109.62658 * 173.98637 * 16 15 14 30 30 H 1.08999 * 109.63101 * 294.57704 * 16 15 14 31 31 H 1.09002 * 117.50452 * 215.41960 * 18 17 16 32 32 H 1.08993 * 117.50483 * 0.47506 * 18 17 16 33 33 H 1.08997 * 117.50444 * 359.79488 * 19 17 16 34 34 H 1.08999 * 117.50500 * 144.80913 * 19 17 16 35 35 H 1.09002 * 109.56767 * 297.64930 * 20 13 12 36 36 H 1.09004 * 109.56552 * 57.88259 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9795 0.0007 14 6 2.9661 -6.0142 1.2510 15 6 4.0968 -7.0390 1.1393 16 6 3.4944 -8.4332 0.9282 17 6 2.5542 -8.3809 -0.2838 18 6 3.1272 -8.7656 -1.6470 19 6 2.1499 -9.7028 -0.9339 20 6 1.5130 -7.2587 -0.2382 21 1 -0.4849 0.8401 -0.0004 22 1 0.3533 -2.3907 -0.0002 23 1 0.6172 -4.9205 -0.8902 24 1 0.6165 -4.9208 0.8897 25 1 3.3890 -5.0282 1.4436 26 1 2.3069 -6.2923 2.0733 27 1 4.7351 -6.7862 0.2928 28 1 4.6864 -7.0321 2.0560 29 1 4.2921 -9.1522 0.7413 30 1 2.9325 -8.7274 1.8146 31 1 2.7599 -8.2238 -2.5186 32 1 4.1743 -9.0656 -1.6864 33 1 2.5541 -10.6194 -0.5043 34 1 1.1396 -9.7777 -1.3360 35 1 0.8052 -7.4499 0.5684 36 1 0.9807 -7.2158 -1.1884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334248806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:01 Heat of formation + Delta-G solvation = -12.448010 kcal Electronic energy + Delta-G solvation = -17129.987760 eV Core-core repulsion = 14421.538194 eV Total energy + Delta-G solvation = -2708.449566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.51264 -37.99369 -35.52640 -33.79103 -32.39452 -31.15711 -28.02210 -27.06308 -24.66258 -22.79390 -22.47287 -21.39542 -19.09134 -18.44785 -17.79216 -16.05572 -15.42532 -15.19136 -14.83980 -14.59041 -14.07198 -13.88494 -13.51692 -13.36968 -12.89032 -12.43066 -12.39388 -11.93927 -11.52659 -11.49582 -11.34135 -11.04139 -10.85447 -10.67465 -10.41572 -10.27836 -10.17312 -9.96071 -9.62606 -9.40175 -8.35220 -7.93211 -7.74151 -6.38440 -3.79032 3.22322 3.27658 3.32114 3.69607 3.95206 4.14939 4.34121 4.65386 4.81554 4.99167 5.06709 5.14299 5.28647 5.31645 5.48050 5.62642 5.70079 5.72625 5.73996 5.87357 5.91844 5.95493 6.02483 6.04226 6.09172 6.16822 6.32088 6.33861 6.57647 6.62930 7.41980 7.53034 7.58295 8.10172 8.65998 9.21663 9.58563 10.10850 10.79420 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052901 B = 0.004942 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.166745 B = 5664.279282 C = 5878.130714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.576 6.576 12 C 0.046 3.954 13 N -0.511 5.511 14 C 0.053 3.947 15 C -0.109 4.109 16 C -0.082 4.082 17 C -0.115 4.115 18 C -0.161 4.161 19 C -0.179 4.179 20 C 0.093 3.907 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.101 0.899 26 H 0.018 0.982 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.032 0.968 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -15.364 0.731 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.086 4.086 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.198 4.198 19 C -0.217 4.217 20 C -0.035 4.035 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.105 0.895 24 H 0.064 0.936 25 H 0.119 0.881 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.025 -15.102 0.353 15.241 hybrid contribution -0.918 0.711 0.582 1.298 sum 1.108 -14.391 0.935 14.464 Atomic orbital electron populations 1.69607 1.05935 1.28187 1.50742 1.25249 0.95615 0.99666 0.97403 0.85925 0.78754 0.80526 0.79050 1.19911 1.21014 1.19945 1.19650 0.93319 0.82248 1.47574 0.87992 1.41866 1.09171 1.04580 1.64621 1.19747 0.88421 0.84536 0.84267 1.90486 1.13685 1.86886 1.54941 1.21833 0.94002 0.91352 1.01367 1.61494 1.24851 1.01009 1.36213 1.22190 0.94830 1.01803 0.88587 1.21523 0.97909 0.93428 1.01862 1.21257 0.97154 0.97744 0.95774 1.21417 1.00155 0.95188 0.94817 1.22918 0.98551 1.02595 0.95761 1.22970 1.00204 0.93719 1.04803 1.21653 0.93430 0.88013 1.00389 0.91876 0.77521 0.89476 0.93638 0.88065 0.96338 0.90811 0.91927 0.92096 0.92136 0.88709 0.89128 0.89064 0.89036 0.94974 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 10 C 0.44 10.69 7.42 -10.99 -0.08 10.61 16 11 O -0.58 -15.68 13.94 5.54 0.08 -15.60 16 12 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 13 N -0.51 -8.99 4.40 -235.94 -1.04 -10.02 16 14 C 0.05 0.92 5.01 -3.88 -0.02 0.90 16 15 C -0.11 -1.58 6.12 -26.55 -0.16 -1.74 16 16 C -0.08 -0.99 5.77 -26.31 -0.15 -1.15 16 17 C -0.12 -1.45 2.12 -154.41 -0.33 -1.77 16 18 C -0.16 -1.89 9.93 -26.82 -0.27 -2.15 16 19 C -0.18 -1.84 10.00 -26.84 -0.27 -2.10 16 20 C 0.09 1.31 5.19 -3.66 -0.02 1.29 16 21 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 22 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 23 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 24 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.10 2.09 5.75 -51.93 -0.30 1.79 16 26 H 0.02 0.30 8.13 -51.93 -0.42 -0.13 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -30.36 294.43 -8.06 -38.41 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.61 Total: 8.55 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.56 Total: -3.32 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.37 Total: -48.67 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.08 Total: -15.60 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.36 -8.06 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334248806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.966 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds