Wall clock time and date at job start Sun Mar 29 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00459 * 2 1 4 4 H 1.48501 * 109.47127 * 239.99946 * 3 2 1 5 5 H 1.48497 * 109.46768 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47269 * 119.99911 * 3 2 1 7 7 C 1.38959 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99962 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00010 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99990 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46914 * 180.02562 * 12 10 9 14 14 C 1.46780 * 111.00060 * 65.78635 * 13 12 10 15 15 C 1.53010 * 109.89192 * 188.89694 * 14 13 12 16 16 C 1.53331 * 109.19602 * 297.73404 * 15 14 13 17 17 C 1.53479 * 108.56487 * 54.29308 * 16 15 14 18 18 C 1.52796 * 117.79007 * 93.83327 * 17 16 15 19 19 C 1.52763 * 117.94971 * 162.85251 * 17 16 15 20 20 C 1.47058 * 110.99882 * 189.99756 * 13 12 10 21 21 H 0.96998 * 119.99190 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99922 * 0.02562 * 9 7 2 23 23 H 1.08994 * 109.47395 * 60.00130 * 12 10 9 24 24 H 1.09003 * 109.46811 * 299.99731 * 12 10 9 25 25 H 1.09000 * 109.39928 * 309.02025 * 14 13 12 26 26 H 1.08998 * 109.40284 * 68.85109 * 14 13 12 27 27 H 1.09000 * 109.51723 * 57.64876 * 15 14 13 28 28 H 1.09002 * 109.51817 * 177.81884 * 15 14 13 29 29 H 1.09003 * 109.62658 * 173.98637 * 16 15 14 30 30 H 1.08999 * 109.63101 * 294.57704 * 16 15 14 31 31 H 1.09002 * 117.50452 * 215.41960 * 18 17 16 32 32 H 1.08993 * 117.50483 * 0.47506 * 18 17 16 33 33 H 1.08997 * 117.50444 * 359.79488 * 19 17 16 34 34 H 1.08999 * 117.50500 * 144.80913 * 19 17 16 35 35 H 1.09002 * 109.56767 * 297.64930 * 20 13 12 36 36 H 1.09004 * 109.56552 * 57.88259 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9795 0.0007 14 6 2.9661 -6.0142 1.2510 15 6 4.0968 -7.0390 1.1393 16 6 3.4944 -8.4332 0.9282 17 6 2.5542 -8.3809 -0.2838 18 6 3.1272 -8.7656 -1.6470 19 6 2.1499 -9.7028 -0.9339 20 6 1.5130 -7.2587 -0.2382 21 1 -0.4849 0.8401 -0.0004 22 1 0.3533 -2.3907 -0.0002 23 1 0.6172 -4.9205 -0.8902 24 1 0.6165 -4.9208 0.8897 25 1 3.3890 -5.0282 1.4436 26 1 2.3069 -6.2923 2.0733 27 1 4.7351 -6.7862 0.2928 28 1 4.6864 -7.0321 2.0560 29 1 4.2921 -9.1522 0.7413 30 1 2.9325 -8.7274 1.8146 31 1 2.7599 -8.2238 -2.5186 32 1 4.1743 -9.0656 -1.6864 33 1 2.5541 -10.6194 -0.5043 34 1 1.1396 -9.7777 -1.3360 35 1 0.8052 -7.4499 0.5684 36 1 0.9807 -7.2158 -1.1884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334248806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:00 Heat of formation + Delta-G solvation = -32.846614 kcal Electronic energy + Delta-G solvation = -17130.872310 eV Core-core repulsion = 14421.538194 eV Total energy + Delta-G solvation = -2709.334116 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81505 -39.64694 -36.83168 -35.78799 -33.65145 -33.15928 -29.41376 -28.33504 -26.53096 -24.09172 -23.37940 -22.58495 -20.94056 -19.85721 -19.49889 -17.75593 -16.73979 -16.56201 -16.30717 -16.11522 -15.72444 -15.40044 -15.05445 -14.60930 -14.25101 -13.81353 -13.59027 -13.47639 -13.20127 -12.98905 -12.68390 -12.43057 -12.29640 -12.15364 -12.06343 -11.84003 -11.46112 -11.35638 -10.92614 -10.55732 -10.21287 -9.99134 -9.13490 -8.45850 -5.94582 1.39935 1.41452 1.52586 2.05988 2.28416 2.63392 3.10320 3.20832 3.42254 3.70742 3.87428 4.04580 4.09760 4.18477 4.31796 4.39783 4.41014 4.51457 4.64747 4.71623 4.76215 4.81791 4.86982 4.99109 5.04418 5.11684 5.19705 5.34458 5.39195 5.41156 5.45544 5.92459 6.13309 6.27919 6.61734 7.13580 7.57035 8.13247 8.71518 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052901 B = 0.004942 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.166745 B = 5664.279282 C = 5878.130714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.613 6.613 12 C 0.057 3.943 13 N -0.531 5.531 14 C 0.055 3.945 15 C -0.105 4.105 16 C -0.075 4.075 17 C -0.136 4.136 18 C -0.173 4.173 19 C -0.151 4.151 20 C 0.093 3.907 21 H 0.278 0.722 22 H 0.396 0.604 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -16.815 0.823 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.499 6.499 12 C -0.074 4.074 13 N -0.256 5.256 14 C -0.073 4.073 15 C -0.143 4.143 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.210 4.210 19 C -0.189 4.189 20 C -0.034 4.034 21 H 0.087 0.913 22 H 0.229 0.771 23 H 0.126 0.874 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.061 0.939 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.374 -16.576 0.444 16.639 hybrid contribution -0.714 1.123 0.545 1.438 sum 0.660 -15.453 0.989 15.499 Atomic orbital electron populations 1.69670 1.06850 1.29330 1.50409 1.26033 0.96532 1.02366 0.96280 0.84991 0.77761 0.76658 0.78931 1.19767 1.19422 1.19692 1.19624 0.92668 0.84007 1.49974 0.90369 1.41934 1.09274 1.04690 1.65352 1.20743 0.88315 0.85883 0.82155 1.90463 1.15662 1.87732 1.56010 1.21710 0.93716 0.88845 1.03143 1.61476 1.25339 1.02254 1.36505 1.22086 0.95804 1.00330 0.89052 1.21479 0.96830 0.94380 1.01619 1.21217 0.97625 0.96138 0.96204 1.21462 1.00533 0.96268 0.95339 1.22958 0.99357 1.03545 0.95100 1.23040 1.00325 0.93004 1.02504 1.21734 0.94006 0.86603 1.01018 0.91309 0.77077 0.87425 0.91802 0.92441 0.95162 0.93060 0.90574 0.90351 0.90957 0.89645 0.88720 0.87262 0.87965 0.93891 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.42 13.05 21.67 0.28 -50.13 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -30.29 5.29 -306.98 -1.62 -31.91 16 10 C 0.44 21.77 7.42 87.66 0.65 22.42 16 11 O -0.61 -34.77 13.94 -3.07 -0.04 -34.81 16 12 C 0.06 2.09 5.45 85.56 0.47 2.56 16 13 N -0.53 -18.36 4.40 -900.37 -3.96 -22.32 16 14 C 0.06 1.89 5.01 86.33 0.43 2.33 16 15 C -0.11 -2.97 6.12 30.71 0.19 -2.78 16 16 C -0.07 -1.62 5.77 30.87 0.18 -1.44 16 17 C -0.14 -3.06 2.12 -52.12 -0.11 -3.17 16 18 C -0.17 -3.69 9.93 30.54 0.30 -3.38 16 19 C -0.15 -2.56 10.00 30.53 0.31 -2.25 16 20 C 0.09 2.44 5.19 86.32 0.45 2.89 16 21 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 22 H 0.40 19.79 7.90 -92.71 -0.73 19.05 16 23 H 0.11 3.50 8.04 -2.39 -0.02 3.48 16 24 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 25 H 0.06 2.48 5.75 -2.39 -0.01 2.46 16 26 H 0.03 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.94 8.04 -2.38 -0.02 1.92 16 Total: -1.00 -66.47 294.43 1.16 -65.31 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.33 Total: 29.83 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.14 Total: -1.50 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -5.30 Total: -104.36 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.04 Total: -34.81 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.47 1.16 -65.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334248806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.466 kcal (2) G-P(sol) polarization free energy of solvation -66.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds