Wall clock time and date at job start Sun Mar 29 2020 23:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.48474 * 110.99581 * 287.60737 * 13 12 10 15 15 C 1.54929 * 103.21789 * 200.16900 * 14 13 12 16 16 C 1.54447 * 102.93960 * 37.71086 * 15 14 13 17 17 H 1.08997 * 112.39792 * 99.36170 * 16 15 14 18 18 C 1.54110 * 109.03561 * 223.77221 * 16 15 14 19 19 C 1.54875 * 104.16170 * 137.47946 * 18 16 15 20 20 C 1.54819 * 102.74154 * 321.54377 * 19 18 16 21 21 C 1.47918 * 110.99709 * 169.99826 * 13 12 10 22 22 H 1.08999 * 111.35378 * 23.75184 * 21 13 12 23 23 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 25 25 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 26 26 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 27 27 H 1.08997 * 110.67274 * 318.60411 * 14 13 12 28 28 H 1.09003 * 110.66857 * 81.74003 * 14 13 12 29 29 H 1.09001 * 110.72231 * 279.34950 * 15 14 13 30 30 H 1.08997 * 110.87474 * 156.14184 * 15 14 13 31 31 H 1.09004 * 110.48927 * 256.15132 * 18 16 15 32 32 H 1.09003 * 110.49162 * 18.67682 * 18 16 15 33 33 H 1.09008 * 110.75807 * 79.86065 * 19 18 16 34 34 H 1.09000 * 110.76158 * 203.04411 * 19 18 16 35 35 H 1.08993 * 110.44600 * 279.05958 * 20 19 18 36 36 H 1.08998 * 110.44296 * 156.52740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 5.8263 -4.3940 1.3463 15 6 6.8269 -5.5768 1.3425 16 6 8.0592 -4.9851 0.6237 17 1 8.8326 -4.6642 1.3215 18 6 8.5961 -6.0180 -0.3861 19 6 8.9248 -5.1802 -1.6465 20 6 7.7641 -4.1566 -1.6884 21 6 7.5103 -3.8026 -0.2084 22 1 7.9874 -2.8635 0.0721 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3633 0.0059 25 1 5.9281 -1.8591 -0.8704 26 1 5.9199 -1.8544 0.9095 27 1 6.0559 -3.6984 2.1535 28 1 4.8018 -4.7570 1.4295 29 1 6.4234 -6.4215 0.7841 30 1 7.0800 -5.8746 2.3600 31 1 9.4963 -6.4965 -0.0004 32 1 7.8341 -6.7647 -0.6098 33 1 9.8832 -4.6732 -1.5343 34 1 8.9233 -5.8070 -2.5383 35 1 6.8751 -4.6068 -2.1300 36 1 8.0596 -3.2685 -2.2470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335399626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:06 Heat of formation + Delta-G solvation = -33.021394 kcal Electronic energy + Delta-G solvation = -17268.304037 eV Core-core repulsion = 14558.962343 eV Total energy + Delta-G solvation = -2709.341695 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91299 -38.06545 -34.81504 -33.77933 -31.92364 -31.52606 -28.28789 -26.99168 -25.73378 -23.71732 -21.12835 -20.62373 -19.32416 -19.11316 -18.28433 -16.30073 -15.97786 -15.02828 -14.77531 -14.72022 -14.29041 -13.80225 -13.44128 -13.19856 -12.88331 -12.51641 -12.20343 -12.01619 -11.53685 -11.33761 -11.21477 -11.03412 -10.87401 -10.77369 -10.66714 -10.56099 -10.53011 -10.27635 -9.93918 -9.51082 -8.52922 -8.13657 -7.98184 -6.27300 -3.78228 3.04818 3.09249 3.16987 3.80457 4.04839 4.13677 4.39635 4.56245 4.78066 4.92924 5.21633 5.24622 5.28170 5.37276 5.40182 5.47833 5.59734 5.65816 5.68275 5.80064 5.85042 5.92681 5.98101 5.99807 6.03369 6.11564 6.19988 6.34797 6.42950 6.51434 7.21915 7.29723 7.63584 8.19101 8.65370 8.99986 9.47261 9.89713 10.86095 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.005460 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.268222 B = 5126.959309 C = 5369.427231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.595 5.595 10 C 0.456 3.544 11 O -0.558 6.558 12 C 0.033 3.967 13 N -0.485 5.485 14 C 0.039 3.961 15 C -0.117 4.117 16 C -0.101 4.101 17 H 0.077 0.923 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.111 4.111 21 C 0.060 3.940 22 H 0.056 0.944 23 H 0.273 0.727 24 H 0.369 0.631 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.895 -5.540 0.487 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.235 5.235 10 C 0.241 3.759 11 O -0.439 6.439 12 C -0.099 4.099 13 N -0.209 5.209 14 C -0.089 4.089 15 C -0.155 4.155 16 C -0.120 4.120 17 H 0.096 0.904 18 C -0.152 4.152 19 C -0.162 4.162 20 C -0.149 4.149 21 C -0.049 4.049 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.202 0.798 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.968 -6.401 0.076 19.074 hybrid contribution 0.974 2.089 0.676 2.402 sum 18.943 -4.312 0.752 19.442 Atomic orbital electron populations 1.69623 1.05616 1.27390 1.49776 1.25023 0.95470 0.97897 0.97801 0.86679 0.79731 0.84140 0.78873 1.19626 1.20236 1.19605 1.19426 0.79269 0.96585 1.47845 0.86319 1.42219 1.07494 1.06133 1.67625 1.19648 0.88044 0.84505 0.83676 1.90543 1.69382 1.30865 1.53093 1.22099 0.95732 0.90612 1.01427 1.64573 1.11307 1.15134 1.29891 1.23295 1.01366 0.95005 0.89192 1.22625 0.94549 0.98379 0.99980 1.22555 0.97241 0.95294 0.96924 0.90436 1.22432 1.00418 0.97327 0.95011 1.22485 0.98193 0.97615 0.97871 1.22372 0.98768 0.98500 0.95263 1.23117 0.88622 0.97089 0.96057 0.92584 0.91689 0.79806 0.89434 0.93337 0.94565 0.88467 0.90516 0.91602 0.92204 0.91068 0.92001 0.91679 0.89833 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.96 55.50 0.77 -25.38 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.68 27.74 -169.99 -4.72 14.97 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.54 6.51 56.52 0.37 -5.17 16 7 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.52 5.09 -10.96 -0.06 -14.58 16 10 C 0.46 10.66 7.61 -10.98 -0.08 10.58 16 11 O -0.56 -15.25 14.62 5.55 0.08 -15.17 16 12 C 0.03 0.59 5.22 -4.97 -0.03 0.56 16 13 N -0.49 -8.11 4.37 -222.83 -0.97 -9.09 16 14 C 0.04 0.62 5.93 -1.94 -0.01 0.61 16 15 C -0.12 -1.47 6.60 -24.95 -0.16 -1.63 16 16 C -0.10 -1.14 3.82 -88.40 -0.34 -1.48 16 17 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.11 -1.14 6.37 -25.16 -0.16 -1.30 16 19 C -0.12 -1.22 6.90 -24.78 -0.17 -1.39 16 20 C -0.11 -1.35 6.51 -25.10 -0.16 -1.51 16 21 C 0.06 0.78 3.27 -65.61 -0.21 0.57 16 22 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 25 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 26 H 0.05 0.77 7.84 -51.93 -0.41 0.36 16 27 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 28 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 29 H 0.08 0.99 7.22 -51.93 -0.37 0.61 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.76 7.21 -51.93 -0.37 0.38 16 33 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.19 7.97 -51.93 -0.41 0.78 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 285.73 15.07 4.31 4.31 Total: -1.00 -32.01 285.73 -7.66 -39.67 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.50 Total: 8.08 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.58 Total: -2.81 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.26 Total: -49.04 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.72 Total: 14.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.01 -7.66 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335399626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.649 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds