Wall clock time and date at job start Sun Mar 29 2020 23:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.48474 * 110.99581 * 287.60737 * 13 12 10 15 15 C 1.54929 * 103.21789 * 200.16900 * 14 13 12 16 16 C 1.54447 * 102.93960 * 37.71086 * 15 14 13 17 17 H 1.08997 * 112.39792 * 99.36170 * 16 15 14 18 18 C 1.54110 * 109.03561 * 223.77221 * 16 15 14 19 19 C 1.54875 * 104.16170 * 137.47946 * 18 16 15 20 20 C 1.54819 * 102.74154 * 321.54377 * 19 18 16 21 21 C 1.47918 * 110.99709 * 169.99826 * 13 12 10 22 22 H 1.08999 * 111.35378 * 23.75184 * 21 13 12 23 23 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 25 25 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 26 26 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 27 27 H 1.08997 * 110.67274 * 318.60411 * 14 13 12 28 28 H 1.09003 * 110.66857 * 81.74003 * 14 13 12 29 29 H 1.09001 * 110.72231 * 279.34950 * 15 14 13 30 30 H 1.08997 * 110.87474 * 156.14184 * 15 14 13 31 31 H 1.09004 * 110.48927 * 256.15132 * 18 16 15 32 32 H 1.09003 * 110.49162 * 18.67682 * 18 16 15 33 33 H 1.09008 * 110.75807 * 79.86065 * 19 18 16 34 34 H 1.09000 * 110.76158 * 203.04411 * 19 18 16 35 35 H 1.08993 * 110.44600 * 279.05958 * 20 19 18 36 36 H 1.08998 * 110.44296 * 156.52740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 5.8263 -4.3940 1.3463 15 6 6.8269 -5.5768 1.3425 16 6 8.0592 -4.9851 0.6237 17 1 8.8326 -4.6642 1.3215 18 6 8.5961 -6.0180 -0.3861 19 6 8.9248 -5.1802 -1.6465 20 6 7.7641 -4.1566 -1.6884 21 6 7.5103 -3.8026 -0.2084 22 1 7.9874 -2.8635 0.0721 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3633 0.0059 25 1 5.9281 -1.8591 -0.8704 26 1 5.9199 -1.8544 0.9095 27 1 6.0559 -3.6984 2.1535 28 1 4.8018 -4.7570 1.4295 29 1 6.4234 -6.4215 0.7841 30 1 7.0800 -5.8746 2.3600 31 1 9.4963 -6.4965 -0.0004 32 1 7.8341 -6.7647 -0.6098 33 1 9.8832 -4.6732 -1.5343 34 1 8.9233 -5.8070 -2.5383 35 1 6.8751 -4.6068 -2.1300 36 1 8.0596 -3.2685 -2.2470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335399626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:05 Heat of formation + Delta-G solvation = -56.454089 kcal Electronic energy + Delta-G solvation = -17269.320155 eV Core-core repulsion = 14558.962343 eV Total energy + Delta-G solvation = -2710.357813 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09258 -39.82508 -36.22262 -35.56602 -33.77661 -32.91112 -29.54343 -28.01038 -27.24443 -25.38356 -22.31683 -21.47296 -21.26460 -20.24809 -20.10362 -17.72621 -17.39959 -16.69855 -16.21441 -16.12897 -15.50525 -15.08908 -14.93286 -14.63882 -14.44883 -14.10676 -13.79997 -13.37486 -12.94693 -12.61494 -12.43426 -12.41662 -12.13929 -11.98226 -11.81965 -11.65216 -11.60188 -11.50277 -11.45646 -11.20580 -10.38188 -10.24760 -9.28426 -8.41917 -6.02655 1.28778 1.34657 1.43305 1.95684 2.22205 2.66451 3.13424 3.24718 3.52147 3.67179 3.90219 4.15255 4.25004 4.31149 4.33386 4.41149 4.49316 4.53862 4.63219 4.67596 4.84346 4.90530 4.99456 5.09569 5.12931 5.22996 5.27138 5.33759 5.40689 5.52968 5.59725 5.91237 6.00619 6.20171 6.60040 6.88114 7.39433 7.97469 8.76021 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.005460 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.268222 B = 5126.959309 C = 5369.427231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.328 4.328 8 H 0.053 0.947 9 N -0.594 5.594 10 C 0.452 3.548 11 O -0.607 6.607 12 C 0.046 3.954 13 N -0.513 5.513 14 C 0.035 3.965 15 C -0.111 4.111 16 C -0.095 4.095 17 H 0.101 0.899 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.113 4.113 21 C 0.057 3.943 22 H 0.075 0.925 23 H 0.279 0.721 24 H 0.389 0.611 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.110 -3.752 0.697 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.457 4.457 8 H 0.072 0.928 9 N -0.236 5.236 10 C 0.240 3.760 11 O -0.491 6.491 12 C -0.086 4.086 13 N -0.237 5.237 14 C -0.092 4.092 15 C -0.148 4.148 16 C -0.114 4.114 17 H 0.120 0.880 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.051 4.051 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.224 0.776 25 H 0.133 0.867 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.216 -4.627 0.284 22.695 hybrid contribution -0.436 1.394 0.597 1.577 sum 21.781 -3.233 0.881 22.037 Atomic orbital electron populations 1.69807 1.08136 1.29241 1.50439 1.26110 0.96465 1.02676 0.96070 0.85358 0.79404 0.76719 0.79990 1.18066 1.19863 1.15642 1.18995 0.81468 0.94902 1.50361 0.92840 1.42043 1.05824 1.07516 1.68203 1.20897 0.90769 0.83314 0.81025 1.90527 1.71286 1.32737 1.54518 1.22007 0.90525 0.92112 1.03944 1.64501 1.14271 1.14604 1.30346 1.23219 0.99908 0.96651 0.89469 1.22586 0.94262 0.96585 1.01416 1.22603 0.96867 0.94754 0.97159 0.88037 1.22428 1.00915 0.96852 0.94873 1.22467 0.97950 0.97004 0.97993 1.22371 0.98564 0.99515 0.94713 1.23284 0.86114 0.98761 0.96892 0.90746 0.91131 0.77579 0.86726 0.90495 0.93698 0.93030 0.91709 0.89452 0.89949 0.92460 0.90000 0.91185 0.92888 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.96 21.66 0.30 -57.05 16 2 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.97 39.52 27.74 68.60 1.90 41.43 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.23 -8.07 6.51 99.48 0.65 -7.43 16 7 C -0.33 -19.75 10.16 84.04 0.85 -18.89 16 8 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 9 N -0.59 -29.08 5.09 -306.97 -1.56 -30.64 16 10 C 0.45 21.50 7.61 87.66 0.67 22.17 16 11 O -0.61 -35.18 14.62 -3.07 -0.04 -35.23 16 12 C 0.05 1.52 5.22 85.56 0.45 1.97 16 13 N -0.51 -16.66 4.37 -858.89 -3.76 -20.41 16 14 C 0.04 1.13 5.93 86.66 0.51 1.64 16 15 C -0.11 -2.62 6.60 31.75 0.21 -2.41 16 16 C -0.10 -1.84 3.82 -9.36 -0.04 -1.87 16 17 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 18 C -0.11 -1.92 6.37 31.61 0.20 -1.72 16 19 C -0.12 -1.90 6.90 31.86 0.22 -1.68 16 20 C -0.11 -2.50 6.51 31.65 0.21 -2.29 16 21 C 0.06 1.33 3.27 45.72 0.15 1.48 16 22 H 0.07 1.49 7.81 -2.39 -0.02 1.47 16 23 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 24 H 0.39 15.78 5.76 -92.71 -0.53 15.25 16 25 H 0.11 3.22 8.08 -2.38 -0.02 3.20 16 26 H 0.08 2.16 7.84 -2.39 -0.02 2.15 16 27 H 0.04 1.32 7.82 -2.39 -0.02 1.30 16 28 H 0.05 2.09 7.08 -2.39 -0.02 2.08 16 29 H 0.06 1.67 7.22 -2.39 -0.02 1.65 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.13 7.21 -2.39 -0.02 1.11 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.49 7.97 -2.39 -0.02 1.47 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -76.10 285.73 1.21 -74.89 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.47 Total: 28.99 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 3.90 Total: -1.97 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.02 Total: -108.10 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.04 Total: -35.23 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.43 kcal Total: -76.10 1.21 -74.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335399626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.433 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds