Wall clock time and date at job start Sun Mar 29 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47268 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47285 * 30.00158 * 3 2 1 6 6 H 1.48503 * 109.46985 * 149.99951 * 3 2 1 7 7 C 1.37875 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99911 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99720 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00303 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00321 * 5.09415 * 11 10 9 13 13 N 1.34784 * 120.00200 * 185.09267 * 11 10 9 14 14 C 1.46856 * 120.67636 * 174.74480 * 13 11 10 15 15 C 1.52617 * 109.51959 * 236.52388 * 14 13 11 16 16 C 1.53198 * 109.50526 * 302.50194 * 15 14 13 17 17 C 1.53139 * 108.98905 * 57.81569 * 16 15 14 18 18 C 1.52785 * 117.79521 * 90.34580 * 17 16 15 19 19 C 1.52757 * 117.85340 * 159.34072 * 17 16 15 20 20 C 1.47146 * 120.67309 * 355.02175 * 13 11 10 21 21 H 0.96994 * 120.00361 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46982 * 60.00462 * 9 7 2 23 23 H 1.09000 * 109.47851 * 300.00548 * 9 7 2 24 24 H 0.97000 * 119.99420 * 0.02562 * 10 9 7 25 25 H 1.08997 * 109.51163 * 356.49923 * 14 13 11 26 26 H 1.09006 * 109.50801 * 116.63441 * 14 13 11 27 27 H 1.09001 * 109.54904 * 182.42658 * 15 14 13 28 28 H 1.09001 * 109.33360 * 62.44878 * 15 14 13 29 29 H 1.08997 * 109.55184 * 297.96750 * 16 15 14 30 30 H 1.09000 * 109.63557 * 177.71478 * 16 15 14 31 31 H 1.08994 * 117.50876 * 215.30713 * 18 17 16 32 32 H 1.09008 * 117.50466 * 0.36268 * 18 17 16 33 33 H 1.08997 * 117.50160 * 359.73715 * 19 17 16 34 34 H 1.09001 * 117.50203 * 144.76588 * 19 17 16 35 35 H 1.09004 * 109.75005 * 249.31554 * 20 13 11 36 36 H 1.09005 * 109.75185 * 10.04028 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0013 11 6 5.3250 -2.8213 0.0005 12 8 6.1145 -1.9011 0.0922 13 7 5.7752 -4.0877 -0.1018 14 6 7.2125 -4.3647 -0.2196 15 6 7.4739 -5.1725 -1.4878 16 6 6.6552 -6.4667 -1.4477 17 6 5.1720 -6.1138 -1.3035 18 6 4.3577 -5.9219 -2.5820 19 6 4.1446 -7.1661 -1.7166 20 6 4.8359 -5.2203 -0.1039 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6795 0.8895 23 1 3.8746 -0.6806 -0.8904 24 1 3.3697 -3.3124 0.0020 25 1 7.7616 -3.4244 -0.2696 26 1 7.5454 -4.9357 0.6471 27 1 8.5345 -5.4153 -1.5535 28 1 7.1811 -4.5840 -2.3573 29 1 6.9705 -7.0716 -0.5976 30 1 6.8089 -7.0261 -2.3705 31 1 3.5766 -5.1618 -2.5719 32 1 4.8749 -6.0524 -3.5326 33 1 4.5215 -8.1150 -2.0981 34 1 3.2233 -7.2247 -1.1371 35 1 4.9424 -5.7889 0.8200 36 1 3.8141 -4.8515 -0.1942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335699622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:04 Heat of formation + Delta-G solvation = -5.701543 kcal Electronic energy + Delta-G solvation = -17332.273150 eV Core-core repulsion = 14624.116133 eV Total energy + Delta-G solvation = -2708.157017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14650 -38.23093 -35.13978 -34.22863 -32.75077 -31.86491 -28.09734 -27.73242 -25.26758 -22.82824 -22.37750 -21.40479 -19.92098 -18.68430 -17.99709 -16.41151 -15.88674 -15.44171 -15.08089 -14.61802 -14.27543 -14.02324 -13.59717 -13.39142 -13.05090 -12.73889 -12.51613 -12.27231 -12.04544 -11.55903 -11.40552 -11.12001 -10.97134 -10.82498 -10.73238 -10.18819 -9.93908 -9.80664 -9.46924 -9.41520 -8.75265 -8.46626 -7.91003 -6.18903 -4.20577 3.09352 3.29636 3.36436 3.45878 3.70049 3.81230 4.36372 4.47230 4.58906 4.67666 4.82754 4.86769 5.03233 5.16861 5.22564 5.42956 5.47143 5.58280 5.62844 5.70779 5.76186 5.84874 5.90601 5.96439 6.09382 6.15477 6.24472 6.68160 6.87871 7.15111 7.28839 7.43549 7.55506 8.28436 8.69419 8.82043 9.23161 9.43112 10.93092 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032484 B = 0.006324 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.760732 B = 4426.384438 C = 5036.836055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.723 5.723 11 C 0.700 3.300 12 O -0.602 6.602 13 N -0.633 5.633 14 C 0.131 3.869 15 C -0.133 4.133 16 C -0.077 4.077 17 C -0.142 4.142 18 C -0.168 4.168 19 C -0.170 4.170 20 C 0.150 3.850 21 H 0.267 0.733 22 H 0.024 0.976 23 H 0.017 0.983 24 H 0.390 0.610 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.220 -14.853 -2.907 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.378 5.378 11 C 0.401 3.599 12 O -0.482 6.482 13 N -0.371 5.371 14 C 0.008 3.992 15 C -0.172 4.172 16 C -0.114 4.114 17 C -0.143 4.143 18 C -0.205 4.205 19 C -0.207 4.207 20 C 0.027 3.973 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.226 0.774 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.600 -13.983 -2.835 18.388 hybrid contribution -0.114 0.430 -0.109 0.458 sum 11.485 -13.553 -2.944 18.007 Atomic orbital electron populations 1.69882 1.06198 1.27395 1.49640 1.24775 0.94778 0.99144 0.93885 0.86815 0.80657 0.83187 0.79047 1.19875 1.20928 1.18394 1.21082 0.88569 0.95136 1.53133 0.90410 1.19360 0.94800 0.77759 0.96610 1.45552 1.03799 1.10972 1.77442 1.16006 0.83591 0.82192 0.78062 1.90842 1.55467 1.42927 1.58953 1.47220 1.06752 1.04340 1.78834 1.21169 0.80851 1.00706 0.96499 1.21835 0.99596 0.96558 0.99166 1.21072 0.91670 0.97040 1.01665 1.21786 0.93659 1.01685 0.97191 1.23036 1.02806 1.00137 0.94490 1.22965 1.00278 0.93648 1.03823 1.21144 0.93359 0.86823 0.96009 0.92296 0.95841 0.96494 0.77386 0.89022 0.92326 0.90924 0.91459 0.91490 0.91851 0.88336 0.88982 0.88811 0.88493 0.91270 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.13 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.24 6.06 4.50 -5.20 -0.02 6.04 16 10 N -0.72 -15.65 5.46 -66.41 -0.36 -16.01 16 11 C 0.70 14.64 8.30 -86.92 -0.72 13.92 16 12 O -0.60 -14.79 15.77 5.29 0.08 -14.70 16 13 N -0.63 -10.06 2.98 -178.65 -0.53 -10.60 16 14 C 0.13 1.75 6.30 -4.04 -0.03 1.72 16 15 C -0.13 -1.42 6.07 -26.82 -0.16 -1.58 16 16 C -0.08 -0.73 5.64 -26.56 -0.15 -0.88 16 17 C -0.14 -1.55 2.10 -154.51 -0.32 -1.87 16 18 C -0.17 -1.88 9.92 -26.82 -0.27 -2.14 16 19 C -0.17 -1.60 10.00 -26.83 -0.27 -1.87 16 20 C 0.15 1.93 6.18 -3.53 -0.02 1.91 16 21 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 24 H 0.39 7.54 5.81 -40.82 -0.24 7.30 16 25 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.10 5.56 -51.93 -0.29 0.81 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -32.43 291.38 -8.18 -40.61 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.46 Total: 3.25 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.40 Total: 1.92 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.12 Total: -52.58 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.43 -8.18 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335699622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.907 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds