Wall clock time and date at job start Sun Mar 29 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47268 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47285 * 30.00158 * 3 2 1 6 6 H 1.48503 * 109.46985 * 149.99951 * 3 2 1 7 7 C 1.37875 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99911 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99720 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00303 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00321 * 5.09415 * 11 10 9 13 13 N 1.34784 * 120.00200 * 185.09267 * 11 10 9 14 14 C 1.46856 * 120.67636 * 174.74480 * 13 11 10 15 15 C 1.52617 * 109.51959 * 236.52388 * 14 13 11 16 16 C 1.53198 * 109.50526 * 302.50194 * 15 14 13 17 17 C 1.53139 * 108.98905 * 57.81569 * 16 15 14 18 18 C 1.52785 * 117.79521 * 90.34580 * 17 16 15 19 19 C 1.52757 * 117.85340 * 159.34072 * 17 16 15 20 20 C 1.47146 * 120.67309 * 355.02175 * 13 11 10 21 21 H 0.96994 * 120.00361 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46982 * 60.00462 * 9 7 2 23 23 H 1.09000 * 109.47851 * 300.00548 * 9 7 2 24 24 H 0.97000 * 119.99420 * 0.02562 * 10 9 7 25 25 H 1.08997 * 109.51163 * 356.49923 * 14 13 11 26 26 H 1.09006 * 109.50801 * 116.63441 * 14 13 11 27 27 H 1.09001 * 109.54904 * 182.42658 * 15 14 13 28 28 H 1.09001 * 109.33360 * 62.44878 * 15 14 13 29 29 H 1.08997 * 109.55184 * 297.96750 * 16 15 14 30 30 H 1.09000 * 109.63557 * 177.71478 * 16 15 14 31 31 H 1.08994 * 117.50876 * 215.30713 * 18 17 16 32 32 H 1.09008 * 117.50466 * 0.36268 * 18 17 16 33 33 H 1.08997 * 117.50160 * 359.73715 * 19 17 16 34 34 H 1.09001 * 117.50203 * 144.76588 * 19 17 16 35 35 H 1.09004 * 109.75005 * 249.31554 * 20 13 11 36 36 H 1.09005 * 109.75185 * 10.04028 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0013 11 6 5.3250 -2.8213 0.0005 12 8 6.1145 -1.9011 0.0922 13 7 5.7752 -4.0877 -0.1018 14 6 7.2125 -4.3647 -0.2196 15 6 7.4739 -5.1725 -1.4878 16 6 6.6552 -6.4667 -1.4477 17 6 5.1720 -6.1138 -1.3035 18 6 4.3577 -5.9219 -2.5820 19 6 4.1446 -7.1661 -1.7166 20 6 4.8359 -5.2203 -0.1039 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6795 0.8895 23 1 3.8746 -0.6806 -0.8904 24 1 3.3697 -3.3124 0.0020 25 1 7.7616 -3.4244 -0.2696 26 1 7.5454 -4.9357 0.6471 27 1 8.5345 -5.4153 -1.5535 28 1 7.1811 -4.5840 -2.3573 29 1 6.9705 -7.0716 -0.5976 30 1 6.8089 -7.0261 -2.3705 31 1 3.5766 -5.1618 -2.5719 32 1 4.8749 -6.0524 -3.5326 33 1 4.5215 -8.1150 -2.0981 34 1 3.2233 -7.2247 -1.1371 35 1 4.9424 -5.7889 0.8200 36 1 3.8141 -4.8515 -0.1942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335699622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:04 Heat of formation + Delta-G solvation = -27.107826 kcal Electronic energy + Delta-G solvation = -17333.201396 eV Core-core repulsion = 14624.116133 eV Total energy + Delta-G solvation = -2709.085263 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47898 -39.47092 -36.49422 -35.94395 -34.58283 -33.26178 -29.85705 -28.93482 -26.49417 -24.31731 -23.40807 -22.70920 -21.42730 -20.00955 -19.30012 -18.41943 -17.35607 -16.71013 -16.45047 -16.16749 -15.49607 -15.35193 -15.05794 -14.84603 -14.46293 -14.27734 -13.79288 -13.68995 -13.39304 -13.04568 -12.71895 -12.46365 -12.32431 -12.00702 -11.93610 -11.80538 -11.63751 -11.19083 -11.01610 -10.92951 -10.60121 -10.12715 -9.41133 -8.41269 -6.48284 1.32164 1.33894 1.47923 1.72484 2.15468 2.27787 2.78505 2.94110 3.18931 3.60443 3.80087 3.94766 4.00632 4.12829 4.27803 4.45549 4.58558 4.65521 4.71349 4.77376 4.82945 4.95005 4.99124 5.02769 5.05258 5.11563 5.22084 5.27626 5.31811 5.40198 5.52139 5.61021 5.93966 6.18536 6.52318 7.05913 7.17591 7.60754 8.73489 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032484 B = 0.006324 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.760732 B = 4426.384438 C = 5036.836055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.252 3.748 10 N -0.724 5.724 11 C 0.695 3.305 12 O -0.644 6.644 13 N -0.624 5.624 14 C 0.124 3.876 15 C -0.126 4.126 16 C -0.071 4.071 17 C -0.148 4.148 18 C -0.186 4.186 19 C -0.146 4.146 20 C 0.143 3.857 21 H 0.273 0.727 22 H 0.010 0.990 23 H 0.007 0.993 24 H 0.401 0.599 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.594 -16.550 -3.060 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.127 3.873 10 N -0.380 5.380 11 C 0.397 3.603 12 O -0.527 6.527 13 N -0.361 5.361 14 C 0.002 3.998 15 C -0.164 4.164 16 C -0.109 4.109 17 C -0.149 4.149 18 C -0.223 4.223 19 C -0.184 4.184 20 C 0.021 3.979 21 H 0.082 0.918 22 H 0.027 0.973 23 H 0.025 0.975 24 H 0.238 0.762 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.977 -15.755 -2.996 20.630 hybrid contribution -0.557 0.851 -0.056 1.018 sum 12.420 -14.904 -3.052 19.639 Atomic orbital electron populations 1.69974 1.07600 1.28673 1.50577 1.25559 0.95548 1.02566 0.93462 0.85863 0.79240 0.79318 0.79520 1.18906 1.19506 1.18675 1.21231 0.89734 0.94575 1.52855 0.92457 1.18948 0.93167 0.79771 0.95370 1.45304 1.04723 1.09862 1.78079 1.16159 0.82737 0.83548 0.77883 1.90804 1.56216 1.44853 1.60799 1.47298 1.08511 1.03230 1.77047 1.21443 0.78779 1.00424 0.99203 1.21792 1.01627 0.96475 0.96495 1.21096 0.89909 0.96474 1.03394 1.21804 0.95187 1.02090 0.95771 1.23029 1.02871 1.01119 0.95329 1.23044 0.99663 0.93624 1.02028 1.21389 0.92075 0.86156 0.98278 0.91754 0.97251 0.97484 0.76185 0.91485 0.89737 0.88089 0.93577 0.89597 0.90135 0.90784 0.88222 0.86534 0.88262 0.89031 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.96 21.45 0.30 -55.84 16 2 C 0.03 1.68 5.47 84.65 0.46 2.14 16 3 Si 0.94 45.10 27.47 68.60 1.88 46.99 16 4 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 7 C -0.55 -31.13 9.83 25.60 0.25 -30.87 16 8 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 9 C 0.25 13.10 4.50 85.63 0.39 13.48 16 10 N -0.72 -31.95 5.46 -482.30 -2.63 -34.59 16 11 C 0.70 29.40 8.30 179.05 1.49 30.89 16 12 O -0.64 -32.24 15.77 -4.00 -0.06 -32.30 16 13 N -0.62 -19.36 2.98 -837.38 -2.50 -21.86 16 14 C 0.12 3.11 6.30 86.18 0.54 3.65 16 15 C -0.13 -2.36 6.07 30.53 0.19 -2.17 16 16 C -0.07 -1.09 5.64 30.71 0.17 -0.92 16 17 C -0.15 -2.85 2.10 -52.18 -0.11 -2.96 16 18 C -0.19 -3.94 9.92 30.54 0.30 -3.63 16 19 C -0.15 -2.33 10.00 30.53 0.31 -2.03 16 20 C 0.14 3.46 6.18 86.36 0.53 3.99 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 23 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 24 H 0.40 15.82 5.81 -92.71 -0.54 15.29 16 25 H 0.07 2.03 7.00 -2.39 -0.02 2.01 16 26 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.86 5.56 -2.38 -0.01 1.84 16 Total: -1.00 -70.65 291.38 1.98 -68.67 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.47 Total: 17.36 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 4.52 Total: 11.57 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.83 Total: -112.29 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.06 Total: -32.30 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -70.65 1.98 -68.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335699622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.559 kcal (2) G-P(sol) polarization free energy of solvation -70.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds