Wall clock time and date at job start Sun Mar 29 2020 22:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.53781 * 113.61358 * 38.43803 * 15 14 13 17 17 C 1.53948 * 87.02286 * 220.04602 * 16 15 14 18 18 C 1.53783 * 113.61712 * 300.83222 * 15 14 13 19 19 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 20 20 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 21 21 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 23 23 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 24 24 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 25 25 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 26 26 H 1.09001 * 112.85367 * 169.62961 * 15 14 13 27 27 H 1.09003 * 113.61735 * 334.56788 * 16 15 14 28 28 H 1.09001 * 113.61623 * 105.46914 * 16 15 14 29 29 H 1.09000 * 113.54118 * 270.81035 * 17 16 15 30 30 H 1.08998 * 113.74356 * 139.94059 * 17 16 15 31 31 H 1.08998 * 113.61258 * 254.52972 * 18 15 14 32 32 H 1.08997 * 113.61114 * 25.42527 * 18 15 14 33 33 H 1.08994 * 109.49159 * 303.15220 * 19 14 13 34 34 H 1.08999 * 109.51460 * 183.07675 * 19 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 20 11 9 36 36 H 1.09008 * 109.62635 * 111.48013 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 4.0835 -6.5451 2.9907 17 6 5.3642 -7.3971 2.9262 18 6 5.2996 -7.2382 1.3979 19 6 1.7771 -5.8907 0.8322 20 6 1.2249 -4.9226 -0.2195 21 1 -0.4850 0.8400 0.0004 22 1 3.7736 -3.9711 -1.0920 23 1 3.8007 -2.6840 0.1423 24 1 3.6077 -4.3397 1.9417 25 1 4.9637 -4.8053 0.8859 26 1 3.2106 -7.9561 1.5269 27 1 4.2745 -5.4740 3.0572 28 1 3.3627 -6.8942 3.7301 29 1 5.2219 -8.4233 3.2649 30 1 6.2328 -6.9186 3.3785 31 1 5.5591 -8.1460 0.8532 32 1 5.8236 -6.3570 1.0279 33 1 1.5327 -5.5231 1.8288 34 1 1.3329 -6.8757 0.6888 35 1 0.1612 -4.7606 -0.0453 36 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335888753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:20 Heat of formation + Delta-G solvation = 0.255974 kcal Electronic energy + Delta-G solvation = -17559.556224 eV Core-core repulsion = 14851.657545 eV Total energy + Delta-G solvation = -2707.898680 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87231 -37.74310 -35.48736 -32.67052 -32.29969 -30.53392 -27.21267 -25.88618 -25.59176 -23.35254 -23.14266 -20.96282 -19.17780 -18.41098 -16.73407 -16.16191 -15.53273 -15.30421 -14.37217 -14.32667 -14.22785 -13.99705 -13.62079 -12.73746 -12.67224 -12.40080 -11.90977 -11.86005 -11.36716 -11.22258 -11.06993 -11.00324 -10.90808 -10.65419 -10.48930 -10.46501 -10.23802 -10.01410 -9.90607 -8.85770 -8.02785 -7.57292 -7.14780 -6.19405 -4.64275 3.13502 3.20443 3.23557 4.03625 4.12793 4.55697 4.62354 4.63674 4.68040 4.86682 4.94782 5.40960 5.48717 5.57189 5.61976 5.70097 5.73782 5.82092 5.86298 5.91271 5.93272 5.94976 6.10370 6.17564 6.26876 6.43036 6.50793 6.57231 6.74983 7.34402 7.38299 7.45769 7.64137 8.14464 8.38075 9.02357 9.46068 10.58249 10.76931 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.006237 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.737582 B = 4488.158708 C = 4930.221951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.128 3.872 13 C 0.038 3.962 14 N -0.526 5.526 15 C 0.064 3.936 16 C -0.182 4.182 17 C -0.140 4.140 18 C -0.132 4.132 19 C 0.047 3.953 20 C 0.124 3.876 21 H 0.268 0.732 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -11.163 3.408 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.003 3.997 13 C -0.091 4.091 14 N -0.249 5.249 15 C -0.045 4.045 16 C -0.221 4.221 17 C -0.178 4.178 18 C -0.170 4.170 19 C -0.082 4.082 20 C 0.000 4.000 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.111 0.889 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.332 -11.156 2.947 14.840 hybrid contribution 0.385 0.897 0.905 1.331 sum 9.717 -10.259 3.851 14.646 Atomic orbital electron populations 1.70017 1.07077 1.27271 1.35349 1.25727 0.94604 1.00285 0.92583 0.86397 0.80215 0.81493 0.78824 1.19762 1.18840 1.20436 1.20970 0.93553 0.89276 1.54322 0.90975 1.18255 0.86904 0.82230 0.76079 1.90584 1.14416 1.86135 1.55078 1.48228 1.04760 1.05824 1.79468 1.21590 0.82684 0.98605 0.96809 1.22749 0.98407 0.89255 0.98656 1.61926 1.04750 1.05789 1.52426 1.23215 0.95557 0.95620 0.90116 1.23711 0.98169 1.01135 0.99089 1.22727 0.98116 1.00002 0.96936 1.23075 0.96076 1.02153 0.95713 1.22468 0.87326 0.99533 0.98886 1.21218 0.97860 0.84457 0.96468 0.92109 0.93270 0.88857 0.94211 0.90699 0.88428 0.89270 0.91943 0.90502 0.91566 0.91485 0.89598 0.94796 0.91059 0.89656 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.84 55.55 0.66 -22.47 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.33 8.86 -35.63 -0.32 -15.65 16 8 H 0.07 1.84 5.74 -52.49 -0.30 1.54 16 9 C 0.56 16.16 7.63 -12.99 -0.10 16.06 16 10 O -0.58 -18.98 14.49 5.20 0.08 -18.90 16 11 N -0.64 -15.07 3.00 -173.84 -0.52 -15.59 16 12 C 0.13 2.46 6.50 -3.36 -0.02 2.43 16 13 C 0.04 0.61 4.48 -3.46 -0.02 0.59 16 14 N -0.53 -8.06 4.75 -225.07 -1.07 -9.13 16 15 C 0.06 0.80 3.84 -66.90 -0.26 0.54 16 16 C -0.18 -2.16 7.37 -25.83 -0.19 -2.35 16 17 C -0.14 -1.37 8.09 -25.83 -0.21 -1.57 16 18 C -0.13 -1.41 7.58 -25.92 -0.20 -1.61 16 19 C 0.05 0.78 5.61 -3.70 -0.02 0.76 16 20 C 0.12 2.54 6.61 -3.60 -0.02 2.52 16 21 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 22 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 23 H 0.09 1.84 5.46 -51.93 -0.28 1.56 16 24 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 25 H 0.07 1.02 6.05 -51.93 -0.31 0.71 16 26 H 0.10 1.14 8.04 -51.93 -0.42 0.72 16 27 H 0.09 1.17 5.65 -51.93 -0.29 0.88 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.95 6.20 -51.93 -0.32 0.63 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.09 1.92 7.04 -51.93 -0.37 1.55 16 36 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -33.22 280.99 -8.24 -41.46 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.14 Total: 1.28 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.45 Total: 4.07 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.93 Total: -47.18 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.08 Total: -18.90 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.22 -8.24 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335888753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.716 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds