Wall clock time and date at job start Sun Mar 29 2020 22:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.53781 * 113.61358 * 38.43803 * 15 14 13 17 17 C 1.53948 * 87.02286 * 220.04602 * 16 15 14 18 18 C 1.53783 * 113.61712 * 300.83222 * 15 14 13 19 19 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 20 20 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 21 21 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 23 23 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 24 24 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 25 25 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 26 26 H 1.09001 * 112.85367 * 169.62961 * 15 14 13 27 27 H 1.09003 * 113.61735 * 334.56788 * 16 15 14 28 28 H 1.09001 * 113.61623 * 105.46914 * 16 15 14 29 29 H 1.09000 * 113.54118 * 270.81035 * 17 16 15 30 30 H 1.08998 * 113.74356 * 139.94059 * 17 16 15 31 31 H 1.08998 * 113.61258 * 254.52972 * 18 15 14 32 32 H 1.08997 * 113.61114 * 25.42527 * 18 15 14 33 33 H 1.08994 * 109.49159 * 303.15220 * 19 14 13 34 34 H 1.08999 * 109.51460 * 183.07675 * 19 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 20 11 9 36 36 H 1.09008 * 109.62635 * 111.48013 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 4.0835 -6.5451 2.9907 17 6 5.3642 -7.3971 2.9262 18 6 5.2996 -7.2382 1.3979 19 6 1.7771 -5.8907 0.8322 20 6 1.2249 -4.9226 -0.2195 21 1 -0.4850 0.8400 0.0004 22 1 3.7736 -3.9711 -1.0920 23 1 3.8007 -2.6840 0.1423 24 1 3.6077 -4.3397 1.9417 25 1 4.9637 -4.8053 0.8859 26 1 3.2106 -7.9561 1.5269 27 1 4.2745 -5.4740 3.0572 28 1 3.3627 -6.8942 3.7301 29 1 5.2219 -8.4233 3.2649 30 1 6.2328 -6.9186 3.3785 31 1 5.5591 -8.1460 0.8532 32 1 5.8236 -6.3570 1.0279 33 1 1.5327 -5.5231 1.8288 34 1 1.3329 -6.8757 0.6888 35 1 0.1612 -4.7606 -0.0453 36 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335888753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:19 Heat of formation + Delta-G solvation = -23.521061 kcal Electronic energy + Delta-G solvation = -17560.587274 eV Core-core repulsion = 14851.657545 eV Total energy + Delta-G solvation = -2708.929729 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07216 -39.47505 -37.16762 -34.70400 -34.03559 -32.06271 -29.02003 -27.56052 -26.53553 -24.65260 -24.52607 -22.58093 -20.74928 -19.70271 -18.38190 -17.95522 -17.07722 -16.47166 -16.11719 -15.92218 -15.70575 -15.48032 -15.16420 -14.42462 -13.79095 -13.66343 -13.44996 -13.41916 -13.01389 -12.81978 -12.71284 -12.58957 -12.31309 -12.10582 -11.98776 -11.83269 -11.56458 -11.35312 -11.06515 -10.93842 -9.80530 -9.37050 -8.96557 -8.29941 -6.85103 1.39516 1.41093 1.56464 2.23248 2.44797 2.72824 3.00820 3.58141 3.73416 3.80011 3.93405 4.01749 4.10821 4.12938 4.31098 4.40817 4.49358 4.62964 4.73449 4.74511 4.86914 4.87119 4.93045 4.96440 5.07889 5.16153 5.18861 5.24830 5.37274 5.51387 5.73799 6.07970 6.13725 6.18397 6.41128 6.86810 7.41718 8.45292 8.66429 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.006237 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.737582 B = 4488.158708 C = 4930.221951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.245 1.245 6 H -0.274 1.274 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.539 3.461 10 O -0.634 6.634 11 N -0.648 5.648 12 C 0.123 3.877 13 C 0.049 3.951 14 N -0.527 5.527 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.126 4.126 18 C -0.126 4.126 19 C 0.060 3.940 20 C 0.121 3.879 21 H 0.274 0.726 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.025 0.975 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.014 0.986 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.061 -11.897 3.615 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.169 1.169 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.112 0.888 9 C 0.345 3.655 10 O -0.522 6.522 11 N -0.385 5.385 12 C 0.000 4.000 13 C -0.079 4.079 14 N -0.250 5.250 15 C -0.052 4.052 16 C -0.227 4.227 17 C -0.164 4.164 18 C -0.164 4.164 19 C -0.069 4.069 20 C -0.003 4.003 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.104 0.896 24 H 0.043 0.957 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.331 -11.954 3.155 17.461 hybrid contribution -0.536 1.017 0.828 1.417 sum 11.795 -10.937 3.983 16.571 Atomic orbital electron populations 1.70198 1.09635 1.28913 1.36605 1.27020 0.95501 1.05016 0.91150 0.85035 0.78932 0.75033 0.79424 1.18667 1.16850 1.19842 1.21501 0.94811 0.89727 1.54478 0.88791 1.18711 0.86584 0.84231 0.75925 1.90529 1.16671 1.87427 1.57590 1.48133 1.06700 1.05467 1.78187 1.21787 0.79971 0.99559 0.98686 1.22614 1.00050 0.88816 0.96438 1.61936 1.03502 1.05997 1.53558 1.23452 0.96960 0.94939 0.89878 1.23701 0.99621 1.00641 0.98691 1.22699 0.97028 1.00435 0.96259 1.23050 0.94067 1.02695 0.96564 1.22279 0.88776 0.99626 0.96200 1.21328 0.96241 0.84193 0.98504 0.91626 0.91974 0.89642 0.95715 0.87582 0.87160 0.90807 0.92141 0.88915 0.90717 0.90039 0.89910 0.96781 0.88089 0.92774 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.30 11.84 21.83 0.26 -51.04 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 41.10 29.56 68.60 2.03 43.13 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.57 -32.62 8.86 24.83 0.22 -32.40 16 8 H 0.09 4.78 5.74 -2.91 -0.02 4.77 16 9 C 0.54 32.41 7.63 86.36 0.66 33.07 16 10 O -0.63 -43.95 14.49 -4.31 -0.06 -44.02 16 11 N -0.65 -31.02 3.00 -822.12 -2.47 -33.49 16 12 C 0.12 4.66 6.50 86.50 0.56 5.22 16 13 C 0.05 1.50 4.48 86.54 0.39 1.89 16 14 N -0.53 -15.10 4.75 -865.99 -4.11 -19.22 16 15 C 0.06 1.23 3.84 45.44 0.17 1.41 16 16 C -0.19 -4.04 7.37 31.18 0.23 -3.81 16 17 C -0.13 -2.02 8.09 31.18 0.25 -1.77 16 18 C -0.13 -2.22 7.58 31.12 0.24 -1.98 16 19 C 0.06 1.97 5.61 86.38 0.48 2.46 16 20 C 0.12 5.06 6.61 86.35 0.57 5.63 16 21 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 22 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.09 3.33 5.46 -2.39 -0.01 3.31 16 24 H 0.02 0.84 6.46 -2.39 -0.02 0.82 16 25 H 0.11 2.59 6.05 -2.38 -0.01 2.58 16 26 H 0.11 2.19 8.04 -2.39 -0.02 2.17 16 27 H 0.07 1.83 5.65 -2.39 -0.01 1.82 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.53 6.20 -2.39 -0.01 1.51 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 2.72 8.04 -2.39 -0.02 2.70 16 35 H 0.05 2.58 7.04 -2.39 -0.02 2.56 16 36 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -75.53 280.99 0.96 -74.57 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.07 Total: 18.31 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 4.25 Total: 11.76 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -6.32 Total: -103.74 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -75.53 0.96 -74.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335888753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.046 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds