Wall clock time and date at job start Sun Mar 29 2020 22:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21583 * 120.00270 * 359.72083 * 11 10 9 13 13 N 1.34775 * 119.99585 * 179.72218 * 11 10 9 14 14 C 1.47246 * 135.94676 * 359.63072 * 13 11 10 15 15 C 1.52766 * 87.63852 * 153.79877 * 14 13 11 16 16 C 1.47259 * 135.94200 * 179.97438 * 13 11 10 17 17 C 1.53358 * 115.68478 * 141.55210 * 15 14 13 18 18 C 1.55116 * 103.91548 * 108.95537 * 17 15 14 19 19 C 1.54971 * 102.89754 * 37.09044 * 18 17 15 20 20 C 1.52957 * 116.24748 * 269.29864 * 15 14 13 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.08992 * 113.51090 * 268.47114 * 14 13 11 26 26 H 1.08998 * 113.50951 * 39.04114 * 14 13 11 27 27 H 1.08994 * 113.50831 * 320.96882 * 16 13 11 28 28 H 1.09003 * 113.50149 * 91.47007 * 16 13 11 29 29 H 1.09006 * 110.53364 * 227.55504 * 17 15 14 30 30 H 1.08994 * 110.54100 * 350.34380 * 17 15 14 31 31 H 1.09006 * 110.72528 * 278.74270 * 18 17 15 32 32 H 1.08997 * 110.73083 * 155.44641 * 18 17 15 33 33 H 1.08994 * 110.48218 * 203.88073 * 19 18 17 34 34 H 1.09010 * 110.47788 * 81.25682 * 19 18 17 35 35 H 1.09003 * 110.11202 * 347.27374 * 20 15 14 36 36 H 1.09002 * 110.11151 * 108.85868 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5586 -5.1055 -0.0046 13 7 2.6299 -5.9076 -0.0083 14 6 4.0957 -6.0465 -0.0156 15 6 3.9072 -7.4041 0.6591 16 6 2.5393 -7.3774 -0.0142 17 6 4.8586 -8.5143 0.1960 18 6 5.8062 -8.7223 1.4063 19 6 4.8618 -8.5375 2.6210 20 6 3.9037 -7.4047 2.1887 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 4.5211 -6.1139 -1.0168 26 1 4.6050 -5.3148 0.6116 27 1 1.7379 -7.7662 0.6140 28 1 2.5378 -7.8088 -1.0152 29 1 4.3044 -9.4284 -0.0172 30 1 5.4220 -8.1942 -0.6803 31 1 6.5947 -7.9697 1.4127 32 1 6.2300 -9.7265 1.3963 33 1 5.4288 -8.2413 3.5034 34 1 4.3052 -9.4546 2.8143 35 1 4.2624 -6.4465 2.5647 36 1 2.8981 -7.6005 2.5610 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336105971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:45 Heat of formation + Delta-G solvation = -8.417311 kcal Electronic energy + Delta-G solvation = -16897.515495 eV Core-core repulsion = 14189.240713 eV Total energy + Delta-G solvation = -2708.274782 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76488 -38.21590 -35.53750 -34.05288 -32.25170 -29.46465 -28.87595 -26.97473 -25.98674 -24.53361 -22.19478 -20.93309 -19.50443 -18.45046 -17.71996 -16.12722 -15.96669 -15.52924 -15.17357 -14.78410 -14.50103 -13.79753 -13.59217 -13.22135 -13.06213 -12.65348 -11.95722 -11.84830 -11.65369 -11.39601 -11.25928 -11.22962 -10.94889 -10.92171 -10.85205 -10.69799 -10.27937 -10.23711 -9.34676 -9.31270 -8.70412 -8.38071 -7.67789 -6.12823 -4.19325 3.06104 3.26378 3.32384 3.35268 3.93986 4.12676 4.32352 4.41100 4.48340 4.83129 4.96094 5.04874 5.22254 5.23538 5.29583 5.47832 5.48672 5.54639 5.61595 5.71389 5.72544 5.78927 5.84449 5.97915 6.03940 6.05809 6.17101 6.25643 7.29394 7.55770 7.60175 7.67633 7.98377 8.13146 8.80287 8.96190 9.37879 9.52774 10.97529 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040208 B = 0.004777 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.212417 B = 5859.800669 C = 6216.339882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.726 5.726 11 C 0.723 3.277 12 O -0.598 6.598 13 N -0.670 5.670 14 C 0.112 3.888 15 C -0.100 4.100 16 C 0.136 3.864 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.096 4.096 21 H 0.266 0.734 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.385 0.615 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -16.666 2.124 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.377 5.377 11 C 0.426 3.574 12 O -0.477 6.477 13 N -0.412 5.412 14 C -0.011 4.011 15 C -0.101 4.101 16 C 0.012 3.988 17 C -0.145 4.145 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.134 4.134 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.217 0.783 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.836 -16.424 2.135 20.357 hybrid contribution 0.818 1.118 -0.133 1.392 sum 12.655 -15.306 2.001 19.961 Atomic orbital electron populations 1.69981 1.06095 1.27245 1.48996 1.24944 0.94908 0.99373 0.94779 0.86408 0.79595 0.82656 0.78189 1.20478 1.20994 1.19784 1.21219 0.93233 0.90412 1.53059 0.92008 1.18995 0.87779 0.81017 0.97590 1.45658 1.10776 1.04057 1.77255 1.15523 0.83787 0.80055 0.78016 1.90870 1.13667 1.83729 1.59467 1.48783 1.06521 1.05868 1.80015 1.22960 0.82856 0.95462 0.99856 1.22237 0.96100 0.95573 0.96212 1.22676 0.96118 0.80230 0.99762 1.22162 0.96558 0.97766 0.98062 1.22522 0.97628 1.01319 0.94647 1.22428 0.97270 0.98589 0.97878 1.21778 1.00149 0.99159 0.92305 0.92467 0.95767 0.95753 0.78263 0.90397 0.90828 0.90821 0.90659 0.90937 0.91132 0.91402 0.91703 0.91710 0.91676 0.91210 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.46 5.43 -5.19 -0.03 7.44 16 10 N -0.73 -16.77 5.55 -66.41 -0.37 -17.13 16 11 C 0.72 16.43 8.79 -86.92 -0.76 15.66 16 12 O -0.60 -16.23 17.12 5.29 0.09 -16.14 16 13 N -0.67 -11.33 3.67 -190.83 -0.70 -12.03 16 14 C 0.11 1.36 7.53 -7.78 -0.06 1.30 16 15 C -0.10 -1.03 1.24 -154.74 -0.19 -1.22 16 16 C 0.14 1.79 7.88 -7.92 -0.06 1.72 16 17 C -0.11 -0.82 6.24 -25.43 -0.16 -0.98 16 18 C -0.12 -0.88 6.92 -24.57 -0.17 -1.05 16 19 C -0.12 -0.99 6.85 -24.89 -0.17 -1.16 16 20 C -0.10 -0.99 6.33 -25.95 -0.16 -1.16 16 21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.02 0.75 8.14 -51.92 -0.42 0.32 16 23 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.39 7.79 8.03 -40.82 -0.33 7.47 16 25 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 26 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 27 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.07 0.49 7.83 -51.93 -0.41 0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 36 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -33.70 298.72 -8.64 -42.34 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.70 Total: 1.41 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.19 Total: 6.79 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.33 Total: -55.08 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.70 -8.64 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.925 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds