Wall clock time and date at job start Sun Mar 29 2020 22:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21583 * 120.00270 * 359.72083 * 11 10 9 13 13 N 1.34775 * 119.99585 * 179.72218 * 11 10 9 14 14 C 1.47246 * 135.94676 * 359.63072 * 13 11 10 15 15 C 1.52766 * 87.63852 * 153.79877 * 14 13 11 16 16 C 1.47259 * 135.94200 * 179.97438 * 13 11 10 17 17 C 1.53358 * 115.68478 * 141.55210 * 15 14 13 18 18 C 1.55116 * 103.91548 * 108.95537 * 17 15 14 19 19 C 1.54971 * 102.89754 * 37.09044 * 18 17 15 20 20 C 1.52957 * 116.24748 * 269.29864 * 15 14 13 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.08992 * 113.51090 * 268.47114 * 14 13 11 26 26 H 1.08998 * 113.50951 * 39.04114 * 14 13 11 27 27 H 1.08994 * 113.50831 * 320.96882 * 16 13 11 28 28 H 1.09003 * 113.50149 * 91.47007 * 16 13 11 29 29 H 1.09006 * 110.53364 * 227.55504 * 17 15 14 30 30 H 1.08994 * 110.54100 * 350.34380 * 17 15 14 31 31 H 1.09006 * 110.72528 * 278.74270 * 18 17 15 32 32 H 1.08997 * 110.73083 * 155.44641 * 18 17 15 33 33 H 1.08994 * 110.48218 * 203.88073 * 19 18 17 34 34 H 1.09010 * 110.47788 * 81.25682 * 19 18 17 35 35 H 1.09003 * 110.11202 * 347.27374 * 20 15 14 36 36 H 1.09002 * 110.11151 * 108.85868 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5586 -5.1055 -0.0046 13 7 2.6299 -5.9076 -0.0083 14 6 4.0957 -6.0465 -0.0156 15 6 3.9072 -7.4041 0.6591 16 6 2.5393 -7.3774 -0.0142 17 6 4.8586 -8.5143 0.1960 18 6 5.8062 -8.7223 1.4063 19 6 4.8618 -8.5375 2.6210 20 6 3.9037 -7.4047 2.1887 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 4.5211 -6.1139 -1.0168 26 1 4.6050 -5.3148 0.6116 27 1 1.7379 -7.7662 0.6140 28 1 2.5378 -7.8088 -1.0152 29 1 4.3044 -9.4284 -0.0172 30 1 5.4220 -8.1942 -0.6803 31 1 6.5947 -7.9697 1.4127 32 1 6.2300 -9.7265 1.3963 33 1 5.4288 -8.2413 3.5034 34 1 4.3052 -9.4546 2.8143 35 1 4.2624 -6.4465 2.5647 36 1 2.8981 -7.6005 2.5610 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336105971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:44 Heat of formation + Delta-G solvation = -31.835976 kcal Electronic energy + Delta-G solvation = -16898.531004 eV Core-core repulsion = 14189.240713 eV Total energy + Delta-G solvation = -2709.290291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.91936 -39.85413 -36.54391 -36.12062 -34.34861 -30.85679 -29.62001 -28.79474 -27.08236 -25.79893 -24.16672 -21.60166 -21.20094 -19.45760 -19.25197 -17.98940 -17.42776 -16.93139 -16.58281 -16.22605 -15.69045 -15.28056 -14.91623 -14.63085 -14.24652 -14.03739 -13.91040 -13.53767 -12.92340 -12.72572 -12.57942 -12.43123 -12.23179 -11.97674 -11.88166 -11.75665 -11.50269 -11.33437 -11.19567 -11.04941 -10.82633 -10.11563 -9.42000 -8.30228 -6.47658 1.41701 1.45688 1.55331 1.61752 2.18371 2.37292 3.04421 3.11913 3.25658 3.62671 3.80333 4.08716 4.32476 4.44803 4.46877 4.56788 4.58303 4.63388 4.79401 4.81939 4.91851 5.05205 5.06732 5.12181 5.17713 5.21824 5.30941 5.34528 5.46278 5.47333 5.57290 5.68569 5.82199 6.41874 6.64556 7.16554 7.22557 7.68349 8.82458 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040208 B = 0.004777 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.212417 B = 5859.800669 C = 6216.339882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.286 3.714 10 N -0.720 5.720 11 C 0.716 3.284 12 O -0.654 6.654 13 N -0.674 5.674 14 C 0.109 3.891 15 C -0.081 4.081 16 C 0.126 3.874 17 C -0.100 4.100 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.103 4.103 21 H 0.270 0.730 22 H -0.016 1.016 23 H -0.017 1.017 24 H 0.401 0.599 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.563 -17.229 1.843 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.812 3.188 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.100 0.900 9 C 0.163 3.837 10 N -0.373 5.373 11 C 0.419 3.581 12 O -0.538 6.538 13 N -0.414 5.414 14 C -0.012 4.012 15 C -0.082 4.082 16 C 0.004 3.996 17 C -0.138 4.138 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.141 4.141 21 H 0.079 0.921 22 H 0.002 0.998 23 H 0.001 0.999 24 H 0.236 0.764 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.374 -17.061 1.855 23.041 hybrid contribution -0.272 1.170 -0.025 1.201 sum 15.102 -15.891 1.830 21.999 Atomic orbital electron populations 1.70149 1.08362 1.28682 1.49773 1.26104 0.95807 1.03958 0.93674 0.85094 0.78410 0.76612 0.78686 1.19438 1.20770 1.17901 1.21561 0.94210 0.90346 1.53243 0.89954 1.18431 0.88078 0.83357 0.93811 1.45244 1.10736 1.03569 1.77781 1.15709 0.83830 0.80788 0.77759 1.90814 1.16523 1.84702 1.61763 1.48848 1.08509 1.06237 1.77818 1.23369 0.79520 0.96532 1.01804 1.22127 0.94599 0.95637 0.95843 1.23085 0.97615 0.77638 1.01279 1.22176 0.96000 0.96782 0.98875 1.22526 0.97229 1.02508 0.93374 1.22412 0.96974 0.97632 0.98710 1.21832 0.99894 0.99838 0.92505 0.92136 0.99779 0.99857 0.76387 0.87700 0.90241 0.92156 0.88428 0.89820 0.89536 0.90995 0.90007 0.91180 0.91129 0.92228 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.99 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.56 -31.48 9.28 25.60 0.24 -31.24 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.29 16.83 5.43 85.63 0.46 17.29 16 10 N -0.72 -34.26 5.55 -482.29 -2.68 -36.94 16 11 C 0.72 33.69 8.79 179.05 1.57 35.27 16 12 O -0.65 -37.56 17.12 -3.98 -0.07 -37.63 16 13 N -0.67 -22.64 3.67 -875.91 -3.21 -25.86 16 14 C 0.11 2.39 7.53 83.55 0.63 3.02 16 15 C -0.08 -1.49 1.24 -52.32 -0.07 -1.56 16 16 C 0.13 3.19 7.88 83.45 0.66 3.85 16 17 C -0.10 -1.14 6.24 31.44 0.20 -0.95 16 18 C -0.12 -1.23 6.92 31.99 0.22 -1.00 16 19 C -0.12 -1.61 6.85 31.79 0.22 -1.39 16 20 C -0.10 -2.01 6.33 31.10 0.20 -1.81 16 21 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 22 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 23 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 24 H 0.40 16.16 8.03 -92.71 -0.74 15.42 16 25 H 0.11 1.82 7.96 -2.39 -0.02 1.80 16 26 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 27 H 0.06 1.68 7.91 -2.39 -0.02 1.66 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 0.84 8.13 -2.38 -0.02 0.82 16 30 H 0.09 0.78 7.83 -2.39 -0.02 0.76 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 1.27 7.82 -2.39 -0.02 1.26 16 36 H 0.05 1.18 7.79 -2.39 -0.02 1.16 16 Total: -1.00 -77.13 298.72 1.46 -75.67 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.32 Total: 14.80 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 4.79 Total: 22.18 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -5.60 Total: -120.11 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.07 Total: -37.63 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -77.13 1.46 -75.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.832 kcal (2) G-P(sol) polarization free energy of solvation -77.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds