Wall clock time and date at job start Sun Mar 29 2020 22:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47352 * 269.99673 * 3 2 1 5 5 H 1.48499 * 109.47437 * 30.00255 * 3 2 1 6 6 H 1.48509 * 109.47027 * 150.00321 * 3 2 1 7 7 C 1.37880 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00501 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99634 * 179.97438 * 7 2 1 10 10 N 1.46908 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.46852 * 111.00019 * 293.95543 * 10 9 7 12 12 C 1.53051 * 109.64025 * 186.37039 * 11 10 9 13 13 C 1.53267 * 109.16995 * 300.19938 * 12 11 10 14 14 C 1.52262 * 109.23359 * 56.43239 * 13 12 11 15 15 C 1.53759 * 110.73867 * 180.64023 * 14 13 12 16 16 N 1.46932 * 105.33150 * 266.60584 * 15 14 13 17 17 C 1.34839 * 111.35287 * 343.67576 * 16 15 14 18 18 O 1.21284 * 125.13241 * 180.34396 * 17 16 15 19 19 C 1.51444 * 109.92522 * 0.30089 * 17 16 15 20 20 C 1.46996 * 110.99874 * 58.07386 * 10 9 7 21 21 H 0.96996 * 119.99881 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47089 * 60.00861 * 9 7 2 23 23 H 1.08998 * 109.47624 * 300.00134 * 9 7 2 24 24 H 1.09007 * 109.43960 * 66.32091 * 11 10 9 25 25 H 1.08997 * 109.44396 * 306.42725 * 11 10 9 26 26 H 1.08998 * 109.51966 * 180.28779 * 12 11 10 27 27 H 1.08998 * 109.56593 * 60.13803 * 12 11 10 28 28 H 1.08999 * 109.51275 * 296.50061 * 13 12 11 29 29 H 1.09005 * 109.51155 * 176.35477 * 13 12 11 30 30 H 1.09006 * 110.27282 * 25.57072 * 15 14 13 31 31 H 1.08996 * 110.27389 * 147.63848 * 15 14 13 32 32 H 0.96994 * 124.34696 * 163.63715 * 16 15 14 33 33 H 1.09002 * 110.51733 * 257.03254 * 19 17 16 34 34 H 1.08998 * 110.51528 * 134.44747 * 19 17 16 35 35 H 1.09005 * 109.44463 * 55.50495 * 20 10 9 36 36 H 1.08993 * 109.44678 * 295.60235 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5792 -0.0022 11 6 3.6522 -3.2617 1.2503 12 6 4.3099 -4.6433 1.2838 13 6 3.8123 -5.4667 0.0907 14 6 4.1040 -4.7097 -1.1978 15 6 3.6034 -5.4993 -2.4184 16 7 4.7588 -6.2848 -2.8735 17 6 5.9086 -5.8167 -2.3473 18 8 7.0112 -6.2747 -2.5608 19 6 5.6206 -4.6317 -1.4494 20 6 3.4920 -3.3169 -1.1673 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6806 0.8889 23 1 3.8746 -0.6801 -0.8911 24 1 2.5697 -3.3736 1.3132 25 1 4.0051 -2.6713 2.0958 26 1 4.0456 -5.1501 2.2119 27 1 5.3928 -4.5336 1.2244 28 1 2.7383 -5.6285 0.1827 29 1 4.3257 -6.4281 0.0723 30 1 2.7864 -6.1612 -2.1310 31 1 3.2786 -4.8160 -3.2030 32 1 4.7020 -7.0435 -3.4751 33 1 5.8768 -3.6996 -1.9530 34 1 6.1685 -4.7211 -0.5114 35 1 3.7589 -2.7834 -2.0796 36 1 2.4073 -3.3986 -1.0994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336328454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:56 Heat of formation + Delta-G solvation = -63.149508 kcal Electronic energy + Delta-G solvation = -17759.073809 eV Core-core repulsion = 15048.425661 eV Total energy + Delta-G solvation = -2710.648148 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85358 -39.47429 -37.22771 -35.09302 -33.70503 -32.24351 -29.43903 -29.16200 -26.51977 -25.53135 -23.22184 -22.04567 -21.39726 -19.99529 -18.83639 -18.07209 -16.95418 -16.76668 -16.06438 -15.81694 -15.64462 -15.32489 -14.97044 -14.82008 -14.43236 -14.21899 -13.74849 -13.43544 -13.27775 -12.96775 -12.82575 -12.46113 -12.25790 -12.18285 -11.90226 -11.70262 -11.49901 -11.28599 -11.08593 -10.82513 -10.74957 -10.05213 -8.90895 -8.28531 -6.32593 1.37595 1.40030 1.50543 1.58245 2.36182 2.45109 3.07349 3.21216 3.45558 3.65728 3.77720 3.95284 4.27479 4.30982 4.47651 4.61807 4.68932 4.72806 4.79536 4.84400 4.99415 5.03503 5.08678 5.10224 5.13613 5.19985 5.25377 5.37413 5.47186 5.59828 5.86278 6.03361 6.15118 6.38884 6.49948 6.75116 7.28607 7.34801 8.87151 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036303 B = 0.006504 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.100591 B = 4303.815400 C = 4381.724266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.247 1.247 7 C -0.545 4.545 8 H 0.042 0.958 9 C 0.159 3.841 10 N -0.526 5.526 11 C 0.060 3.940 12 C -0.109 4.109 13 C -0.101 4.101 14 C -0.060 4.060 15 C 0.113 3.887 16 N -0.718 5.718 17 C 0.518 3.482 18 O -0.586 6.586 19 C -0.128 4.128 20 C 0.082 3.918 21 H 0.264 0.736 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.013 0.987 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.417 0.583 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.369 -10.246 -2.095 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.170 1.170 7 C -0.584 4.584 8 H 0.060 0.940 9 C 0.031 3.969 10 N -0.249 5.249 11 C -0.068 4.068 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.061 4.061 15 C -0.011 4.011 16 N -0.373 5.373 17 C 0.306 3.694 18 O -0.467 6.467 19 C -0.168 4.168 20 C -0.046 4.046 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.031 0.969 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.257 0.743 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.298 -10.261 -2.157 13.372 hybrid contribution -1.327 0.781 -0.190 1.551 sum 6.971 -9.480 -2.347 11.999 Atomic orbital electron populations 1.70067 1.08225 1.27991 1.52444 1.25849 0.95418 1.03169 0.94111 0.85769 0.79575 0.78852 0.79100 1.19339 1.21451 1.17041 1.21930 0.92682 0.93268 1.50516 0.94002 1.20054 0.91865 0.88073 0.96922 1.62435 1.57731 1.02299 1.02399 1.21944 0.97183 0.95455 0.92247 1.21628 1.00911 0.93671 0.98482 1.21453 1.01530 0.98066 0.92802 1.20911 0.94349 0.95028 0.95827 1.22150 0.88299 0.94895 0.95788 1.46282 1.07513 1.34135 1.49341 1.21436 0.83438 0.84484 0.80065 1.90698 1.25978 1.65038 1.65032 1.22245 0.96773 0.97055 1.00740 1.21698 0.96752 0.92140 0.94057 0.92673 0.95387 0.95248 0.96864 0.92087 0.90152 0.90745 0.91527 0.90542 0.88005 0.89932 0.74325 0.87740 0.87674 0.91387 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 13.96 21.45 0.30 -56.65 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.94 42.44 27.47 68.60 1.88 44.32 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 7 C -0.55 -29.03 8.29 25.60 0.21 -28.82 16 8 H 0.04 2.46 6.07 -2.91 -0.02 2.45 16 9 C 0.16 7.03 4.21 85.56 0.36 7.39 16 10 N -0.53 -19.31 4.67 -902.23 -4.21 -23.53 16 11 C 0.06 2.06 5.10 86.33 0.44 2.50 16 12 C -0.11 -2.75 5.91 30.70 0.18 -2.57 16 13 C -0.10 -2.32 4.67 30.44 0.14 -2.18 16 14 C -0.06 -1.47 0.61 -52.14 -0.03 -1.50 16 15 C 0.11 2.19 6.90 86.55 0.60 2.79 16 16 N -0.72 -14.45 6.26 -459.90 -2.88 -17.33 16 17 C 0.52 13.94 8.47 87.88 0.74 14.69 16 18 O -0.59 -20.51 18.03 -3.04 -0.05 -20.57 16 19 C -0.13 -3.23 5.61 30.40 0.17 -3.06 16 20 C 0.08 2.70 3.56 86.01 0.31 3.01 16 21 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 22 H 0.03 1.26 7.11 -2.39 -0.02 1.24 16 23 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 24 H 0.01 0.52 7.05 -2.38 -0.02 0.51 16 25 H 0.06 2.11 8.05 -2.39 -0.02 2.09 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.79 6.63 -2.39 -0.02 1.78 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.10 1.61 7.88 -2.38 -0.02 1.59 16 31 H 0.08 1.57 7.86 -2.39 -0.02 1.55 16 32 H 0.42 6.69 8.96 -92.71 -0.83 5.86 16 33 H 0.10 2.73 7.81 -2.39 -0.02 2.71 16 34 H 0.11 2.64 6.31 -2.39 -0.02 2.62 16 35 H 0.07 2.23 8.05 -2.38 -0.02 2.21 16 36 H 0.03 0.99 6.51 -2.39 -0.02 0.98 16 Total: -1.00 -66.24 278.53 -1.18 -67.43 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.19 Total: 12.90 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 3.59 Total: -6.58 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -6.79 Total: -97.50 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -66.24 -1.18 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336328454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.277 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds