Wall clock time and date at job start Sun Mar 29 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99446 * 2 1 4 4 H 1.48501 * 109.47191 * 269.99645 * 3 2 1 5 5 H 1.48499 * 109.47268 * 30.00318 * 3 2 1 6 6 H 1.48506 * 109.46741 * 150.00128 * 3 2 1 7 7 C 1.37875 * 120.00599 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99429 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46587 * 180.02562 * 9 7 2 11 11 C 1.46844 * 111.00084 * 66.04867 * 10 9 7 12 12 C 1.53055 * 109.66617 * 173.63584 * 11 10 9 13 13 C 1.53276 * 109.16048 * 59.80248 * 12 11 10 14 14 C 1.52257 * 109.27297 * 303.56107 * 13 12 11 15 15 C 1.53756 * 110.75487 * 179.39375 * 14 13 12 16 16 N 1.46932 * 105.33648 * 142.67284 * 15 14 13 17 17 C 1.34507 * 111.30027 * 343.63034 * 16 15 14 18 18 O 1.21278 * 124.94448 * 180.40374 * 17 16 15 19 19 C 1.51434 * 110.10762 * 0.37299 * 17 16 15 20 20 C 1.46999 * 111.00003 * 301.93372 * 10 9 7 21 21 H 0.96995 * 120.00290 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47074 * 60.00363 * 9 7 2 23 23 H 1.08993 * 109.47212 * 299.99619 * 9 7 2 24 24 H 1.08998 * 109.44011 * 53.57592 * 11 10 9 25 25 H 1.09003 * 109.44073 * 293.69063 * 11 10 9 26 26 H 1.09005 * 109.52341 * 299.90079 * 12 11 10 27 27 H 1.09001 * 109.57715 * 179.74171 * 12 11 10 28 28 H 1.09002 * 109.51046 * 63.51332 * 13 12 11 29 29 H 1.08997 * 109.51295 * 183.61168 * 13 12 11 30 30 H 1.09002 * 110.27097 * 261.64197 * 15 14 13 31 31 H 1.09005 * 110.26575 * 23.61601 * 15 14 13 32 32 H 0.96998 * 124.34789 * 163.59326 * 16 15 14 33 33 H 1.09001 * 110.51330 * 257.02381 * 19 17 16 34 34 H 1.09000 * 110.51558 * 134.30921 * 19 17 16 35 35 H 1.09000 * 109.44643 * 304.46512 * 20 10 9 36 36 H 1.09003 * 109.44290 * 64.40612 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 2.9708 -3.6539 1.2523 12 6 3.8389 -4.9139 1.2875 13 6 4.8016 -4.8951 0.0949 14 6 4.0018 -4.7708 -1.1947 15 6 4.9371 -4.7335 -2.4145 16 7 4.2401 -5.4925 -3.4619 17 6 3.2499 -6.2420 -2.9454 18 8 2.5223 -6.9696 -3.5872 19 6 3.1766 -6.0458 -1.4456 20 6 3.0999 -3.5442 -1.1652 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8896 24 1 2.2826 -3.6638 2.0975 25 1 3.6087 -2.7722 1.3150 26 1 3.2022 -5.7967 1.2277 27 1 4.4095 -4.9386 2.2159 28 1 5.4784 -4.0457 0.1868 29 1 5.3783 -5.8199 0.0779 30 1 5.0969 -3.7045 -2.7365 31 1 5.8897 -5.2058 -2.1744 32 1 4.4649 -5.4570 -4.4048 33 1 3.6199 -6.8959 -0.9270 34 1 2.1436 -5.9006 -1.1294 35 1 2.5049 -3.5096 -2.0778 36 1 3.7131 -2.6455 -1.0974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336328455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:00 Heat of formation + Delta-G solvation = -43.259091 kcal Electronic energy + Delta-G solvation = -17808.181137 eV Core-core repulsion = 15098.395503 eV Total energy + Delta-G solvation = -2709.785635 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65207 -38.05604 -35.80089 -33.54902 -31.92711 -30.83757 -28.10781 -26.90775 -25.34857 -24.08407 -21.82851 -20.76202 -20.17437 -18.60603 -17.02907 -16.43297 -15.71487 -15.17681 -14.69927 -14.35473 -14.27935 -13.97061 -13.45885 -13.28711 -12.86792 -12.67351 -12.43990 -11.98034 -11.78651 -11.40898 -11.11078 -10.97876 -10.73992 -10.48203 -10.42583 -10.17242 -9.96866 -9.83543 -9.61069 -9.48890 -8.98040 -8.47115 -7.22317 -6.06371 -4.16195 2.82099 3.23217 3.30797 3.32123 3.52195 4.36096 4.48323 4.61417 4.82881 5.09194 5.13873 5.24650 5.40747 5.48890 5.55138 5.69201 5.69706 5.88428 6.03999 6.16560 6.18887 6.25323 6.38579 6.45774 6.61654 6.65591 6.80278 6.94231 7.12665 7.25131 7.48644 7.86062 8.00179 8.24106 8.25636 8.43223 8.94094 9.50872 10.98603 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.007115 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.811404 B = 3934.247703 C = 4143.983309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.061 3.939 12 C -0.117 4.117 13 C -0.100 4.100 14 C -0.069 4.069 15 C 0.110 3.890 16 N -0.734 5.734 17 C 0.521 3.479 18 O -0.545 6.545 19 C -0.138 4.138 20 C 0.079 3.921 21 H 0.263 0.737 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 -8.534 -0.710 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.262 5.262 11 C -0.067 4.067 12 C -0.155 4.155 13 C -0.138 4.138 14 C -0.070 4.070 15 C -0.015 4.015 16 N -0.390 5.390 17 C 0.308 3.692 18 O -0.422 6.422 19 C -0.178 4.178 20 C -0.049 4.049 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.243 0.757 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.468 -9.234 -0.936 13.991 hybrid contribution 1.076 2.010 -0.383 2.312 sum 11.544 -7.224 -1.319 13.682 Atomic orbital electron populations 1.69939 1.06016 1.26875 1.49930 1.24968 0.94754 0.99137 0.94928 0.86662 0.79885 0.83736 0.78118 1.20667 1.21114 1.19993 1.21737 0.93265 0.92103 1.51892 0.92488 1.19740 0.90694 0.85311 0.98026 1.62446 1.16742 1.46464 1.00567 1.21872 0.95942 0.95401 0.93525 1.21663 0.97471 0.99672 0.96705 1.21423 0.97325 1.01388 0.93702 1.21108 0.95221 0.96542 0.94137 1.22111 0.95119 0.96741 0.87574 1.46291 1.35389 1.47021 1.10275 1.21209 0.78720 0.78048 0.91183 1.90713 1.44428 1.39623 1.67478 1.22351 1.04919 0.98180 0.92374 1.21708 0.94316 0.93618 0.95294 0.92761 0.95099 0.95014 0.91675 0.94505 0.91527 0.92220 0.91745 0.92141 0.90175 0.91177 0.75739 0.88607 0.86369 0.91644 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.58 7.73 -34.44 -0.27 -14.84 16 8 H 0.06 1.48 5.83 -52.49 -0.31 1.17 16 9 C 0.19 4.68 5.14 -4.97 -0.03 4.65 16 10 N -0.54 -10.74 4.31 -236.46 -1.02 -11.76 16 11 C 0.06 1.08 5.10 -3.83 -0.02 1.07 16 12 C -0.12 -1.56 5.92 -26.56 -0.16 -1.72 16 13 C -0.10 -1.19 4.59 -26.97 -0.12 -1.32 16 14 C -0.07 -0.93 0.61 -154.38 -0.09 -1.02 16 15 C 0.11 1.21 6.90 -3.41 -0.02 1.19 16 16 N -0.73 -9.11 6.25 -59.39 -0.37 -9.48 16 17 C 0.52 8.17 8.44 -10.75 -0.09 8.08 16 18 O -0.54 -10.66 18.03 5.56 0.10 -10.56 16 19 C -0.14 -1.94 5.12 -27.04 -0.14 -2.08 16 20 C 0.08 1.41 3.63 -4.14 -0.02 1.40 16 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 24 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 25 H 0.04 0.71 7.04 -51.93 -0.37 0.34 16 26 H 0.07 0.88 7.62 -51.93 -0.40 0.48 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.59 8.03 -51.93 -0.42 0.18 16 30 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 31 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 32 H 0.40 4.27 8.96 -40.82 -0.37 3.91 16 33 H 0.10 1.16 7.78 -51.93 -0.40 0.75 16 34 H 0.12 1.92 7.46 -51.93 -0.39 1.53 16 35 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.05 0.88 6.51 -51.93 -0.34 0.54 16 LS Contribution 283.33 15.07 4.27 4.27 Total: -1.00 -30.66 283.33 -7.82 -38.48 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.46 Total: 1.13 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.05 Total: -2.91 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.65 Total: -46.30 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.10 Total: -10.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.66 -7.82 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336328455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.784 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds