Wall clock time and date at job start Sun Mar 29 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99446 * 2 1 4 4 H 1.48501 * 109.47191 * 269.99645 * 3 2 1 5 5 H 1.48499 * 109.47268 * 30.00318 * 3 2 1 6 6 H 1.48506 * 109.46741 * 150.00128 * 3 2 1 7 7 C 1.37875 * 120.00599 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99429 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46587 * 180.02562 * 9 7 2 11 11 C 1.46844 * 111.00084 * 66.04867 * 10 9 7 12 12 C 1.53055 * 109.66617 * 173.63584 * 11 10 9 13 13 C 1.53276 * 109.16048 * 59.80248 * 12 11 10 14 14 C 1.52257 * 109.27297 * 303.56107 * 13 12 11 15 15 C 1.53756 * 110.75487 * 179.39375 * 14 13 12 16 16 N 1.46932 * 105.33648 * 142.67284 * 15 14 13 17 17 C 1.34507 * 111.30027 * 343.63034 * 16 15 14 18 18 O 1.21278 * 124.94448 * 180.40374 * 17 16 15 19 19 C 1.51434 * 110.10762 * 0.37299 * 17 16 15 20 20 C 1.46999 * 111.00003 * 301.93372 * 10 9 7 21 21 H 0.96995 * 120.00290 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47074 * 60.00363 * 9 7 2 23 23 H 1.08993 * 109.47212 * 299.99619 * 9 7 2 24 24 H 1.08998 * 109.44011 * 53.57592 * 11 10 9 25 25 H 1.09003 * 109.44073 * 293.69063 * 11 10 9 26 26 H 1.09005 * 109.52341 * 299.90079 * 12 11 10 27 27 H 1.09001 * 109.57715 * 179.74171 * 12 11 10 28 28 H 1.09002 * 109.51046 * 63.51332 * 13 12 11 29 29 H 1.08997 * 109.51295 * 183.61168 * 13 12 11 30 30 H 1.09002 * 110.27097 * 261.64197 * 15 14 13 31 31 H 1.09005 * 110.26575 * 23.61601 * 15 14 13 32 32 H 0.96998 * 124.34789 * 163.59326 * 16 15 14 33 33 H 1.09001 * 110.51330 * 257.02381 * 19 17 16 34 34 H 1.09000 * 110.51558 * 134.30921 * 19 17 16 35 35 H 1.09000 * 109.44643 * 304.46512 * 20 10 9 36 36 H 1.09003 * 109.44290 * 64.40612 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 2.9708 -3.6539 1.2523 12 6 3.8389 -4.9139 1.2875 13 6 4.8016 -4.8951 0.0949 14 6 4.0018 -4.7708 -1.1947 15 6 4.9371 -4.7335 -2.4145 16 7 4.2401 -5.4925 -3.4619 17 6 3.2499 -6.2420 -2.9454 18 8 2.5223 -6.9696 -3.5872 19 6 3.1766 -6.0458 -1.4456 20 6 3.0999 -3.5442 -1.1652 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8896 24 1 2.2826 -3.6638 2.0975 25 1 3.6087 -2.7722 1.3150 26 1 3.2022 -5.7967 1.2277 27 1 4.4095 -4.9386 2.2159 28 1 5.4784 -4.0457 0.1868 29 1 5.3783 -5.8199 0.0779 30 1 5.0969 -3.7045 -2.7365 31 1 5.8897 -5.2058 -2.1744 32 1 4.4649 -5.4570 -4.4048 33 1 3.6199 -6.8959 -0.9270 34 1 2.1436 -5.9006 -1.1294 35 1 2.5049 -3.5096 -2.0778 36 1 3.7131 -2.6455 -1.0974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336328455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:00 Heat of formation + Delta-G solvation = -66.553270 kcal Electronic energy + Delta-G solvation = -17809.191249 eV Core-core repulsion = 15098.395503 eV Total energy + Delta-G solvation = -2710.795746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82869 -39.43701 -37.19049 -35.19841 -33.65559 -32.05602 -29.25661 -28.80507 -26.50608 -25.81027 -23.26142 -22.18469 -21.39517 -19.91321 -18.54132 -18.02361 -16.96329 -16.82340 -16.09450 -15.83639 -15.66162 -15.24957 -14.94876 -14.55326 -14.32424 -13.98037 -13.69390 -13.46107 -13.18978 -13.06136 -12.86843 -12.57269 -12.20087 -12.16498 -11.89027 -11.80933 -11.48920 -11.23132 -11.05762 -10.77888 -10.61601 -10.03857 -8.97213 -8.14493 -6.35962 1.36966 1.37296 1.47825 1.61022 2.36656 2.51534 3.09501 3.24678 3.51215 3.65875 3.83496 4.00689 4.28456 4.38426 4.47402 4.70177 4.73728 4.76617 4.81146 4.92865 5.00838 5.10375 5.11108 5.20651 5.26009 5.31483 5.34341 5.43269 5.57767 5.74533 5.91071 6.04682 6.05102 6.27465 6.61139 6.86371 7.29900 7.36285 8.87183 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.007115 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.811404 B = 3934.247703 C = 4143.983309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.200 3.800 10 N -0.540 5.540 11 C 0.060 3.940 12 C -0.109 4.109 13 C -0.096 4.096 14 C -0.062 4.062 15 C 0.113 3.887 16 N -0.722 5.722 17 C 0.512 3.488 18 O -0.594 6.594 19 C -0.133 4.133 20 C 0.084 3.916 21 H 0.264 0.736 22 H -0.005 1.005 23 H 0.003 0.997 24 H 0.049 0.951 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.804 -8.923 -0.320 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.263 5.263 11 C -0.068 4.068 12 C -0.147 4.147 13 C -0.133 4.133 14 C -0.063 4.063 15 C -0.011 4.011 16 N -0.376 5.376 17 C 0.300 3.700 18 O -0.475 6.475 19 C -0.172 4.172 20 C -0.045 4.045 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.021 0.979 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.254 0.746 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.994 -9.614 -0.546 16.987 hybrid contribution -0.043 2.131 -0.497 2.189 sum 13.952 -7.483 -1.043 15.866 Atomic orbital electron populations 1.70084 1.07796 1.27848 1.51209 1.25888 0.95585 1.03099 0.94601 0.85539 0.78806 0.78918 0.78337 1.20046 1.20961 1.18642 1.22003 0.93594 0.92676 1.50986 0.91840 1.19363 0.91300 0.87157 0.94822 1.62354 1.17483 1.43785 1.02677 1.21963 0.95716 0.97580 0.91590 1.21629 0.97277 0.96736 0.99044 1.21461 0.96822 1.03857 0.91179 1.21027 0.94940 0.93508 0.96836 1.22276 0.95597 0.97556 0.85677 1.46284 1.34320 1.45714 1.11302 1.21504 0.78764 0.77833 0.91854 1.90686 1.46364 1.41973 1.68495 1.22303 1.03752 0.99581 0.91605 1.21678 0.93912 0.95835 0.93035 0.92708 0.98706 0.97925 0.93220 0.96096 0.91176 0.89526 0.90841 0.88150 0.89450 0.87018 0.74588 0.85607 0.89164 0.94447 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.55 -30.02 7.73 25.60 0.20 -29.82 16 8 H 0.06 3.30 5.83 -2.91 -0.02 3.28 16 9 C 0.20 10.55 5.14 85.56 0.44 10.99 16 10 N -0.54 -22.10 4.31 -902.01 -3.89 -25.99 16 11 C 0.06 2.09 5.10 86.33 0.44 2.53 16 12 C -0.11 -2.56 5.92 30.71 0.18 -2.38 16 13 C -0.10 -1.82 4.59 30.44 0.14 -1.68 16 14 C -0.06 -1.50 0.61 -52.10 -0.03 -1.53 16 15 C 0.11 2.05 6.90 86.55 0.60 2.65 16 16 N -0.72 -16.19 6.25 -460.37 -2.88 -19.07 16 17 C 0.51 15.51 8.44 87.93 0.74 16.25 16 18 O -0.59 -23.37 18.03 -3.02 -0.05 -23.43 16 19 C -0.13 -3.49 5.12 30.39 0.16 -3.33 16 20 C 0.08 2.99 3.63 86.05 0.31 3.30 16 21 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 22 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H 0.00 0.15 8.05 -2.39 -0.02 0.13 16 24 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 25 H 0.02 0.79 7.04 -2.39 -0.02 0.77 16 26 H 0.07 1.63 7.62 -2.38 -0.02 1.61 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.26 8.03 -2.39 -0.02 1.24 16 30 H 0.09 1.55 7.88 -2.39 -0.02 1.53 16 31 H 0.11 1.28 7.86 -2.38 -0.02 1.26 16 32 H 0.41 7.83 8.96 -92.71 -0.83 7.00 16 33 H 0.13 2.56 7.78 -2.39 -0.02 2.54 16 34 H 0.09 2.94 7.46 -2.39 -0.02 2.92 16 35 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 36 H 0.03 1.24 6.51 -2.39 -0.02 1.23 16 Total: -1.00 -70.37 283.33 -0.63 -71.00 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.24 Total: 9.94 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 3.64 Total: -2.12 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -6.48 Total: -100.48 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.37 -0.63 -71.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336328455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.445 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds