Wall clock time and date at job start Sun Mar 29 2020 23:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47135 * 300.00437 * 3 2 1 6 6 H 1.48499 * 109.46888 * 60.00670 * 3 2 1 7 7 C 1.37878 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47085 * 174.68647 * 9 7 2 11 11 C 1.48535 * 111.00037 * 64.11356 * 10 9 7 12 12 C 1.54317 * 104.77600 * 200.74855 * 11 10 9 13 13 H 1.08998 * 111.82298 * 262.48612 * 12 11 10 14 14 C 1.54064 * 108.91504 * 137.34929 * 12 11 10 15 15 C 1.54843 * 104.41004 * 223.81124 * 14 12 11 16 16 C 1.54847 * 102.73638 * 38.25477 * 15 14 12 17 17 C 1.54171 * 104.32372 * 321.81940 * 16 15 14 18 18 H 1.08993 * 111.79441 * 260.36355 * 17 16 15 19 19 C 1.48524 * 111.00486 * 308.70671 * 10 9 7 20 20 H 1.09007 * 110.39632 * 40.39638 * 19 10 9 21 21 C 1.50698 * 110.40098 * 278.10988 * 19 10 9 22 22 N 1.34775 * 120.00667 * 161.44935 * 21 19 10 23 23 O 1.21283 * 119.99808 * 341.45325 * 21 19 10 24 24 H 0.96996 * 119.99608 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46868 * 54.68619 * 9 7 2 26 26 H 1.08996 * 109.46878 * 294.69210 * 9 7 2 27 27 H 1.08990 * 110.39369 * 319.60805 * 11 10 9 28 28 H 1.09011 * 110.39186 * 81.89235 * 11 10 9 29 29 H 1.08994 * 110.36231 * 105.09981 * 14 12 11 30 30 H 1.09006 * 110.48353 * 342.57833 * 14 12 11 31 31 H 1.08996 * 110.75887 * 279.94688 * 15 14 12 32 32 H 1.09002 * 110.91886 * 156.64013 * 15 14 12 33 33 H 1.08991 * 110.46258 * 203.10997 * 16 15 14 34 34 H 1.09002 * 110.57097 * 80.58251 * 16 15 14 35 35 H 0.97003 * 119.99389 * 0.02562 * 22 21 19 36 36 H 0.96997 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2004 -3.6127 -0.1294 11 6 3.1044 -3.6804 1.0473 12 6 4.3262 -4.4867 0.5591 13 1 4.2582 -5.5369 0.8428 14 6 5.6099 -3.8133 1.0808 15 6 6.5702 -3.8212 -0.1339 16 6 5.6212 -3.5259 -1.3213 17 6 4.3328 -4.3017 -0.9819 18 1 4.2778 -5.2490 -1.5182 19 6 3.1153 -3.4018 -1.2803 20 1 3.4200 -2.3568 -1.3368 21 6 2.4495 -3.8238 -2.5647 22 7 2.9268 -3.3861 -3.7467 23 8 1.4841 -4.5573 -2.5348 24 1 -0.4849 0.8400 0.0004 25 1 0.5546 -2.5166 -0.8389 26 1 0.6980 -2.5994 0.9333 27 1 3.4073 -2.6786 1.3516 28 1 2.6145 -4.1958 1.8735 29 1 6.0323 -4.3890 1.9043 30 1 5.4030 -2.7907 1.3963 31 1 7.0400 -4.7980 -0.2486 32 1 7.3245 -3.0402 -0.0387 33 1 6.0518 -3.8915 -2.2533 34 1 5.4156 -2.4577 -1.3907 35 1 3.6991 -2.7997 -3.7706 36 1 2.4985 -3.6581 -4.5734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364956357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:10 Heat of formation + Delta-G solvation = -43.234777 kcal Electronic energy + Delta-G solvation = -18114.104961 eV Core-core repulsion = 15404.320381 eV Total energy + Delta-G solvation = -2709.784580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01458 -37.88346 -35.09993 -33.04901 -32.48842 -30.17096 -29.24069 -25.86051 -25.75756 -23.02276 -21.38088 -20.51637 -19.23362 -18.82232 -17.28768 -16.41843 -15.96741 -15.22737 -15.05718 -14.48410 -13.91535 -13.67891 -13.50361 -13.11147 -12.55486 -12.41506 -11.72021 -11.57146 -11.23585 -10.99490 -10.90704 -10.78998 -10.66857 -10.39448 -10.35158 -10.25398 -9.94551 -9.83364 -9.64170 -9.12341 -9.06991 -8.46775 -7.24698 -6.06306 -4.16520 3.21462 3.29914 3.31181 3.35074 4.05645 4.34705 4.69312 4.78212 4.95981 5.23127 5.40747 5.51336 5.57480 5.58621 5.74255 5.75848 5.87904 5.90618 5.99037 6.08173 6.22112 6.31674 6.42669 6.52329 6.65899 6.68030 6.82158 7.09139 7.29978 7.51482 7.79831 7.90027 8.00856 8.14872 8.26025 8.93417 8.97383 9.49658 10.99035 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.010294 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.012349 B = 2719.452561 C = 3223.978180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.175 3.825 10 N -0.492 5.492 11 C 0.041 3.959 12 C -0.091 4.091 13 H 0.080 0.920 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.080 4.080 18 H 0.078 0.922 19 C 0.050 3.950 20 H 0.095 0.905 21 C 0.532 3.468 22 N -0.864 5.864 23 O -0.530 6.530 24 H 0.262 0.738 25 H 0.038 0.962 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.936 -5.341 -2.799 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.078 0.922 9 C 0.049 3.951 10 N -0.216 5.216 11 C -0.088 4.088 12 C -0.110 4.110 13 H 0.098 0.902 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.161 4.161 17 C -0.100 4.100 18 H 0.096 0.904 19 C -0.063 4.063 20 H 0.112 0.888 21 C 0.317 3.683 22 N -0.428 5.428 23 O -0.404 6.404 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.223 0.777 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 11.773 -6.191 -2.611 13.555 hybrid contribution 0.923 2.096 -0.327 2.314 sum 12.696 -4.095 -2.938 13.660 Atomic orbital electron populations 1.69971 1.06055 1.26740 1.49486 1.24977 0.94736 0.99099 0.94847 0.86626 0.80071 0.84080 0.77768 1.19744 1.20953 1.20871 1.21736 0.93194 0.92035 1.52340 0.92155 1.19883 0.91567 0.85462 0.98231 1.65526 1.12513 1.43902 0.99622 1.23160 0.92107 0.98995 0.94510 1.22516 0.95005 0.99504 0.93998 0.90208 1.22482 0.94986 1.01050 0.97209 1.22467 0.97354 1.00942 0.95158 1.22559 0.95081 1.00531 0.97932 1.22465 0.93022 0.97961 0.96534 0.90350 1.22741 0.92589 0.99957 0.90968 0.88752 1.20638 0.83312 0.79051 0.85275 1.43888 1.36064 1.54422 1.08446 1.90668 1.26396 1.36030 1.87337 0.92786 0.94373 0.95170 0.92122 0.91512 0.92081 0.91013 0.91880 0.91902 0.91970 0.90993 0.77655 0.77730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.55 -14.85 7.06 -34.44 -0.24 -15.09 16 8 H 0.06 1.55 5.69 -52.49 -0.30 1.25 16 9 C 0.17 4.68 5.16 -4.98 -0.03 4.65 16 10 N -0.49 -11.17 4.93 -225.07 -1.11 -12.28 16 11 C 0.04 0.78 5.83 -2.23 -0.01 0.77 16 12 C -0.09 -1.42 3.95 -88.21 -0.35 -1.77 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.12 -1.57 6.35 -25.20 -0.16 -1.73 16 15 C -0.12 -1.40 6.90 -24.79 -0.17 -1.57 16 16 C -0.12 -1.57 6.36 -25.15 -0.16 -1.73 16 17 C -0.08 -1.26 3.45 -88.15 -0.30 -1.56 16 18 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 19 C 0.05 0.97 1.96 -67.28 -0.13 0.84 16 20 H 0.10 1.95 4.73 -51.92 -0.25 1.71 16 21 C 0.53 10.65 7.11 -10.99 -0.08 10.57 16 22 N -0.86 -12.64 8.87 31.22 0.28 -12.37 16 23 O -0.53 -12.90 17.43 5.56 0.10 -12.80 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.04 1.15 8.11 -51.93 -0.42 0.73 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.25 5.50 -51.93 -0.29 0.97 16 28 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.03 7.18 -51.93 -0.37 0.66 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.97 7.18 -51.93 -0.37 0.60 16 35 H 0.40 4.64 8.83 -40.82 -0.36 4.28 16 36 H 0.39 5.05 8.93 -40.82 -0.36 4.69 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -32.49 284.32 -7.69 -40.19 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.23 Total: 7.45 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.73 Total: -4.86 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.10 Total: -50.02 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.10 Total: -12.80 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.49 -7.69 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364956357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.047 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds