Wall clock time and date at job start Sun Mar 29 2020 23:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47135 * 300.00437 * 3 2 1 6 6 H 1.48499 * 109.46888 * 60.00670 * 3 2 1 7 7 C 1.37878 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47085 * 174.68647 * 9 7 2 11 11 C 1.48535 * 111.00037 * 64.11356 * 10 9 7 12 12 C 1.54317 * 104.77600 * 200.74855 * 11 10 9 13 13 H 1.08998 * 111.82298 * 262.48612 * 12 11 10 14 14 C 1.54064 * 108.91504 * 137.34929 * 12 11 10 15 15 C 1.54843 * 104.41004 * 223.81124 * 14 12 11 16 16 C 1.54847 * 102.73638 * 38.25477 * 15 14 12 17 17 C 1.54171 * 104.32372 * 321.81940 * 16 15 14 18 18 H 1.08993 * 111.79441 * 260.36355 * 17 16 15 19 19 C 1.48524 * 111.00486 * 308.70671 * 10 9 7 20 20 H 1.09007 * 110.39632 * 40.39638 * 19 10 9 21 21 C 1.50698 * 110.40098 * 278.10988 * 19 10 9 22 22 N 1.34775 * 120.00667 * 161.44935 * 21 19 10 23 23 O 1.21283 * 119.99808 * 341.45325 * 21 19 10 24 24 H 0.96996 * 119.99608 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46868 * 54.68619 * 9 7 2 26 26 H 1.08996 * 109.46878 * 294.69210 * 9 7 2 27 27 H 1.08990 * 110.39369 * 319.60805 * 11 10 9 28 28 H 1.09011 * 110.39186 * 81.89235 * 11 10 9 29 29 H 1.08994 * 110.36231 * 105.09981 * 14 12 11 30 30 H 1.09006 * 110.48353 * 342.57833 * 14 12 11 31 31 H 1.08996 * 110.75887 * 279.94688 * 15 14 12 32 32 H 1.09002 * 110.91886 * 156.64013 * 15 14 12 33 33 H 1.08991 * 110.46258 * 203.10997 * 16 15 14 34 34 H 1.09002 * 110.57097 * 80.58251 * 16 15 14 35 35 H 0.97003 * 119.99389 * 0.02562 * 22 21 19 36 36 H 0.96997 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2004 -3.6127 -0.1294 11 6 3.1044 -3.6804 1.0473 12 6 4.3262 -4.4867 0.5591 13 1 4.2582 -5.5369 0.8428 14 6 5.6099 -3.8133 1.0808 15 6 6.5702 -3.8212 -0.1339 16 6 5.6212 -3.5259 -1.3213 17 6 4.3328 -4.3017 -0.9819 18 1 4.2778 -5.2490 -1.5182 19 6 3.1153 -3.4018 -1.2803 20 1 3.4200 -2.3568 -1.3368 21 6 2.4495 -3.8238 -2.5647 22 7 2.9268 -3.3861 -3.7467 23 8 1.4841 -4.5573 -2.5348 24 1 -0.4849 0.8400 0.0004 25 1 0.5546 -2.5166 -0.8389 26 1 0.6980 -2.5994 0.9333 27 1 3.4073 -2.6786 1.3516 28 1 2.6145 -4.1958 1.8735 29 1 6.0323 -4.3890 1.9043 30 1 5.4030 -2.7907 1.3963 31 1 7.0400 -4.7980 -0.2486 32 1 7.3245 -3.0402 -0.0387 33 1 6.0518 -3.8915 -2.2533 34 1 5.4156 -2.4577 -1.3907 35 1 3.6991 -2.7997 -3.7706 36 1 2.4985 -3.6581 -4.5734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364956357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:09 Heat of formation + Delta-G solvation = -69.086475 kcal Electronic energy + Delta-G solvation = -18115.225975 eV Core-core repulsion = 15404.320381 eV Total energy + Delta-G solvation = -2710.905594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48823 -39.38443 -36.70504 -34.54522 -34.48100 -31.47619 -30.82758 -27.71679 -27.07035 -24.80203 -23.04123 -21.64559 -20.78815 -20.14552 -19.00724 -17.99134 -17.62463 -16.80112 -16.47631 -16.07261 -15.40421 -15.15858 -15.01186 -14.70660 -14.36360 -14.10309 -13.12804 -13.06617 -13.00002 -12.72736 -12.50985 -12.20326 -11.91950 -11.84652 -11.80017 -11.63832 -11.46088 -11.37063 -11.27956 -10.70108 -10.64625 -10.55589 -9.08972 -8.17208 -6.38583 1.37350 1.38304 1.50512 1.76891 2.35996 2.65146 3.08117 3.45989 3.55763 3.69253 3.94689 4.23773 4.39343 4.44090 4.53473 4.56082 4.63721 4.70284 4.93795 5.00580 5.01072 5.09011 5.13067 5.24142 5.27169 5.31828 5.36755 5.52435 5.59381 5.71133 5.91105 6.00656 6.16326 6.27171 6.60419 6.82770 7.33291 7.50551 8.87291 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.010294 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.012349 B = 2719.452561 C = 3223.978180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.194 3.806 10 N -0.513 5.513 11 C 0.039 3.961 12 C -0.086 4.086 13 H 0.091 0.909 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.075 4.075 18 H 0.082 0.918 19 C 0.049 3.951 20 H 0.086 0.914 21 C 0.525 3.475 22 N -0.837 5.837 23 O -0.584 6.584 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.004 1.004 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.618 -4.945 -3.345 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.067 3.933 10 N -0.236 5.236 11 C -0.089 4.089 12 C -0.105 4.105 13 H 0.110 0.890 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.094 4.094 18 H 0.100 0.900 19 C -0.063 4.063 20 H 0.103 0.897 21 C 0.310 3.690 22 N -0.402 5.402 23 O -0.463 6.463 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.014 0.986 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 15.519 -5.785 -3.191 16.867 hybrid contribution -0.276 1.917 -0.171 1.944 sum 15.242 -3.869 -3.361 16.081 Atomic orbital electron populations 1.70137 1.08150 1.27878 1.50787 1.25971 0.95551 1.03368 0.94277 0.85417 0.79506 0.78650 0.77619 1.17587 1.20582 1.20773 1.21936 0.93720 0.91933 1.51543 0.90795 1.19417 0.91829 0.87707 0.94377 1.65384 1.13946 1.41961 1.02310 1.23224 0.93245 0.99027 0.93426 1.22553 0.94286 0.99693 0.93946 0.89037 1.22451 0.94004 1.00146 0.98804 1.22463 0.96870 1.02669 0.93049 1.22554 0.93579 0.99574 0.99962 1.22518 0.92629 0.97697 0.96595 0.89985 1.22836 0.93356 1.00350 0.89753 0.89693 1.20859 0.82747 0.78655 0.86749 1.43592 1.35953 1.53201 1.07427 1.90643 1.28703 1.38763 1.88185 0.92689 0.99151 0.98550 0.93560 0.91901 0.89981 0.92492 0.89932 0.90266 0.89265 0.91792 0.75521 0.76337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.55 -30.23 7.06 25.60 0.18 -30.05 16 8 H 0.07 3.77 5.69 -2.91 -0.02 3.76 16 9 C 0.19 11.00 5.16 85.56 0.44 11.44 16 10 N -0.51 -24.09 4.93 -865.98 -4.27 -28.36 16 11 C 0.04 1.51 5.83 86.43 0.50 2.02 16 12 C -0.09 -2.51 3.95 -9.23 -0.04 -2.54 16 13 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.12 -2.68 6.35 31.58 0.20 -2.48 16 15 C -0.11 -2.08 6.90 31.85 0.22 -1.86 16 16 C -0.12 -2.56 6.36 31.62 0.20 -2.36 16 17 C -0.07 -2.19 3.45 -9.19 -0.03 -2.22 16 18 H 0.08 2.37 7.89 -2.39 -0.02 2.35 16 19 C 0.05 1.92 1.96 44.30 0.09 2.00 16 20 H 0.09 3.47 4.73 -2.38 -0.01 3.46 16 21 C 0.52 21.07 7.11 87.66 0.62 21.70 16 22 N -0.84 -23.33 8.87 -173.53 -1.54 -24.87 16 23 O -0.58 -29.34 17.43 -3.04 -0.05 -29.39 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.63 8.11 -2.38 -0.02 -0.65 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.05 1.93 5.50 -2.39 -0.01 1.92 16 28 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.50 7.18 -2.38 -0.02 1.48 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.51 7.18 -2.39 -0.02 1.49 16 35 H 0.41 8.68 8.83 -92.71 -0.82 7.86 16 36 H 0.41 9.82 8.93 -92.71 -0.83 9.00 16 Total: -1.00 -74.28 284.32 -1.25 -75.52 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.55 Total: 22.48 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 2.85 Total: -3.47 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.52 Total: -109.70 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.28 -1.25 -75.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364956357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.437 kcal (2) G-P(sol) polarization free energy of solvation -74.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds