Wall clock time and date at job start Sun Mar 29 2020 23:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47443 * 299.99620 * 3 2 1 6 6 H 1.48505 * 109.47170 * 59.99838 * 3 2 1 7 7 C 1.37881 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47203 * 174.95449 * 9 7 2 11 11 C 1.50032 * 110.99997 * 293.47557 * 10 9 7 12 12 C 1.51536 * 102.46151 * 212.66307 * 11 10 9 13 13 H 1.09010 * 111.11865 * 287.41768 * 12 11 10 14 14 C 1.51568 * 123.28946 * 151.72506 * 12 11 10 15 15 C 1.56326 * 101.85931 * 207.90114 * 14 12 11 16 16 C 1.56110 * 105.72384 * 25.42783 * 15 14 12 17 17 C 1.49720 * 103.99929 * 6.93685 * 16 15 14 18 18 H 1.08994 * 107.86996 * 77.77372 * 17 16 15 19 19 C 1.49697 * 111.00229 * 173.69569 * 10 9 7 20 20 H 1.09000 * 110.40302 * 234.22329 * 19 10 9 21 21 C 1.50706 * 110.39932 * 356.51894 * 19 10 9 22 22 N 1.34768 * 120.00266 * 231.83554 * 21 19 10 23 23 O 1.21280 * 119.99908 * 51.84746 * 21 19 10 24 24 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47056 * 54.95549 * 9 7 2 26 26 H 1.08995 * 109.47347 * 294.95753 * 9 7 2 27 27 H 1.08998 * 110.80655 * 94.41570 * 11 10 9 28 28 H 1.09001 * 110.97485 * 330.98068 * 11 10 9 29 29 H 1.09008 * 110.95715 * 326.05668 * 14 12 11 30 30 H 1.09006 * 110.96362 * 89.74742 * 14 12 11 31 31 H 1.08994 * 110.19100 * 144.51301 * 15 14 12 32 32 H 1.08995 * 110.19148 * 266.37026 * 15 14 12 33 33 H 1.08996 * 110.51721 * 248.30325 * 16 15 14 34 34 H 1.08999 * 110.63520 * 125.62467 * 16 15 14 35 35 H 0.97005 * 120.00341 * 0.02562 * 22 21 19 36 36 H 0.97005 * 120.00224 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2013 -3.6130 -0.1207 11 6 2.8751 -3.6015 -1.4611 12 6 3.0901 -5.0769 -1.7316 13 1 3.8811 -5.4809 -1.0996 14 6 3.1508 -5.6667 -3.1265 15 6 2.6497 -7.1268 -2.8801 16 6 1.7600 -7.0582 -1.5992 17 6 1.6615 -5.5936 -1.3046 18 1 0.9353 -5.1620 -1.9934 19 6 1.5056 -4.9301 0.0285 20 1 1.9809 -5.5246 0.8087 21 6 0.0469 -4.7210 0.3440 22 7 -0.5095 -5.3425 1.4025 23 8 -0.6264 -3.9935 -0.3548 24 1 -0.4850 0.8400 0.0004 25 1 0.5588 -2.5190 -0.8411 26 1 0.6937 -2.5968 0.9320 27 1 3.8276 -3.0741 -1.4111 28 1 2.2286 -3.1590 -2.2190 29 1 2.4833 -5.1345 -3.8043 30 1 4.1724 -5.6641 -3.5069 31 1 2.0605 -7.4708 -3.7300 32 1 3.4968 -7.7924 -2.7146 33 1 2.2391 -7.5829 -0.7726 34 1 0.7724 -7.4760 -1.7946 35 1 0.0290 -5.9242 1.9616 36 1 -1.4484 -5.2076 1.6057 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364956358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:13 Heat of formation + Delta-G solvation = -19.533764 kcal Electronic energy + Delta-G solvation = -17942.345308 eV Core-core repulsion = 15233.588481 eV Total energy + Delta-G solvation = -2708.756827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58656 -38.13648 -34.97970 -33.18892 -32.48022 -30.12326 -29.18828 -26.44662 -25.63131 -22.82924 -21.46548 -20.05549 -19.91987 -19.01978 -16.96640 -16.64856 -15.86006 -15.39812 -14.70347 -14.36579 -14.20702 -13.95175 -13.59713 -13.10490 -12.54957 -12.30332 -12.08426 -11.53532 -11.37164 -11.16602 -11.02570 -10.81843 -10.55249 -10.49717 -10.24763 -10.16874 -10.03888 -9.65751 -9.31203 -9.22786 -8.80762 -8.34251 -7.19035 -5.88178 -3.91511 3.20432 3.36930 3.43509 3.48553 4.00399 4.26876 4.50182 4.79066 4.87642 5.13876 5.32007 5.37671 5.45209 5.46363 5.62204 5.63346 5.81942 5.88056 5.90512 6.01850 6.12624 6.19908 6.27923 6.51255 6.52747 6.68060 6.80593 7.11305 7.23417 7.65460 7.79793 7.85967 8.02360 8.27121 8.57153 8.86714 9.18868 9.71171 11.21077 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.008203 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.027015 B = 3412.686693 C = 4148.328068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.176 3.824 10 N -0.498 5.498 11 C 0.067 3.933 12 C -0.113 4.113 13 H 0.084 0.916 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.101 4.101 17 C -0.126 4.126 18 H 0.075 0.925 19 C 0.069 3.931 20 H 0.087 0.913 21 C 0.505 3.495 22 N -0.861 5.861 23 O -0.516 6.516 24 H 0.258 0.742 25 H 0.034 0.966 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.395 0.605 36 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -15.384 -1.633 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.051 3.949 10 N -0.224 5.224 11 C -0.061 4.061 12 C -0.132 4.132 13 H 0.102 0.898 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.139 4.139 17 C -0.145 4.145 18 H 0.093 0.907 19 C -0.043 4.043 20 H 0.105 0.895 21 C 0.290 3.710 22 N -0.426 5.426 23 O -0.389 6.389 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.223 0.777 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.901 -14.638 -1.806 15.256 hybrid contribution -0.465 0.717 -0.038 0.856 sum 3.436 -13.920 -1.843 14.456 Atomic orbital electron populations 1.70039 1.05932 1.26248 1.50676 1.25003 0.94810 0.99134 0.95668 0.86507 0.80081 0.83777 0.77427 1.19702 1.21152 1.21129 1.21223 0.93357 0.90167 1.50244 0.92121 1.20318 0.90287 0.86752 0.97589 1.65821 1.28125 1.00120 1.28363 1.22354 0.99575 0.93124 0.91032 1.22600 0.96707 0.97164 0.96748 0.89796 1.21900 1.00969 0.95383 0.96439 1.22949 0.98767 0.96851 0.97151 1.21371 0.99613 0.95112 0.97794 1.21925 0.99384 0.96318 0.96920 0.90670 1.21653 0.89890 0.95567 0.97166 0.89505 1.21047 0.90453 0.79093 0.80448 1.43950 1.14722 1.51737 1.32201 1.90827 1.63757 1.34715 1.49625 0.93195 0.94801 0.96031 0.90464 0.93064 0.91363 0.91604 0.91980 0.91735 0.91673 0.92040 0.77748 0.77560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.15 13.29 55.43 0.74 -27.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.51 -15.14 8.71 -34.44 -0.30 -15.44 16 8 H 0.06 1.76 7.78 -52.49 -0.41 1.35 16 9 C 0.18 4.90 3.18 -4.98 -0.02 4.88 16 10 N -0.50 -11.16 5.30 -227.23 -1.20 -12.37 16 11 C 0.07 1.33 5.81 -2.81 -0.02 1.32 16 12 C -0.11 -1.74 3.14 -89.46 -0.28 -2.02 16 13 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 14 C -0.11 -1.38 6.60 -25.67 -0.17 -1.55 16 15 C -0.12 -1.30 6.96 -23.28 -0.16 -1.46 16 16 C -0.10 -1.21 6.73 -26.69 -0.18 -1.39 16 17 C -0.13 -2.00 2.02 -91.24 -0.18 -2.18 16 18 H 0.07 1.42 7.51 -51.93 -0.39 1.03 16 19 C 0.07 1.24 3.70 -68.92 -0.26 0.99 16 20 H 0.09 1.34 7.97 -51.93 -0.41 0.93 16 21 C 0.51 9.94 5.58 -10.99 -0.06 9.88 16 22 N -0.86 -12.36 8.87 31.22 0.28 -12.08 16 23 O -0.52 -12.90 14.18 5.56 0.08 -12.83 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.03 1.07 6.07 -51.93 -0.32 0.75 16 26 H 0.02 0.66 6.86 -51.93 -0.36 0.30 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.05 1.13 7.77 -51.93 -0.40 0.73 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.40 4.17 8.71 -40.82 -0.36 3.82 16 36 H 0.39 5.26 8.93 -40.82 -0.36 4.90 16 LS Contribution 285.42 15.07 4.30 4.30 Total: -1.00 -35.09 285.42 -8.08 -43.17 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.52 Total: 5.16 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.72 Total: -5.42 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.19 Total: -51.86 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -35.09 -8.08 -43.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364956358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.634 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds