Wall clock time and date at job start Sun Mar 29 2020 23:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47443 * 299.99620 * 3 2 1 6 6 H 1.48505 * 109.47170 * 59.99838 * 3 2 1 7 7 C 1.37881 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47203 * 174.95449 * 9 7 2 11 11 C 1.50032 * 110.99997 * 293.47557 * 10 9 7 12 12 C 1.51536 * 102.46151 * 212.66307 * 11 10 9 13 13 H 1.09010 * 111.11865 * 287.41768 * 12 11 10 14 14 C 1.51568 * 123.28946 * 151.72506 * 12 11 10 15 15 C 1.56326 * 101.85931 * 207.90114 * 14 12 11 16 16 C 1.56110 * 105.72384 * 25.42783 * 15 14 12 17 17 C 1.49720 * 103.99929 * 6.93685 * 16 15 14 18 18 H 1.08994 * 107.86996 * 77.77372 * 17 16 15 19 19 C 1.49697 * 111.00229 * 173.69569 * 10 9 7 20 20 H 1.09000 * 110.40302 * 234.22329 * 19 10 9 21 21 C 1.50706 * 110.39932 * 356.51894 * 19 10 9 22 22 N 1.34768 * 120.00266 * 231.83554 * 21 19 10 23 23 O 1.21280 * 119.99908 * 51.84746 * 21 19 10 24 24 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47056 * 54.95549 * 9 7 2 26 26 H 1.08995 * 109.47347 * 294.95753 * 9 7 2 27 27 H 1.08998 * 110.80655 * 94.41570 * 11 10 9 28 28 H 1.09001 * 110.97485 * 330.98068 * 11 10 9 29 29 H 1.09008 * 110.95715 * 326.05668 * 14 12 11 30 30 H 1.09006 * 110.96362 * 89.74742 * 14 12 11 31 31 H 1.08994 * 110.19100 * 144.51301 * 15 14 12 32 32 H 1.08995 * 110.19148 * 266.37026 * 15 14 12 33 33 H 1.08996 * 110.51721 * 248.30325 * 16 15 14 34 34 H 1.08999 * 110.63520 * 125.62467 * 16 15 14 35 35 H 0.97005 * 120.00341 * 0.02562 * 22 21 19 36 36 H 0.97005 * 120.00224 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2013 -3.6130 -0.1207 11 6 2.8751 -3.6015 -1.4611 12 6 3.0901 -5.0769 -1.7316 13 1 3.8811 -5.4809 -1.0996 14 6 3.1508 -5.6667 -3.1265 15 6 2.6497 -7.1268 -2.8801 16 6 1.7600 -7.0582 -1.5992 17 6 1.6615 -5.5936 -1.3046 18 1 0.9353 -5.1620 -1.9934 19 6 1.5056 -4.9301 0.0285 20 1 1.9809 -5.5246 0.8087 21 6 0.0469 -4.7210 0.3440 22 7 -0.5095 -5.3425 1.4025 23 8 -0.6264 -3.9935 -0.3548 24 1 -0.4850 0.8400 0.0004 25 1 0.5588 -2.5190 -0.8411 26 1 0.6937 -2.5968 0.9320 27 1 3.8276 -3.0741 -1.4111 28 1 2.2286 -3.1590 -2.2190 29 1 2.4833 -5.1345 -3.8043 30 1 4.1724 -5.6641 -3.5069 31 1 2.0605 -7.4708 -3.7300 32 1 3.4968 -7.7924 -2.7146 33 1 2.2391 -7.5829 -0.7726 34 1 0.7724 -7.4760 -1.7946 35 1 0.0290 -5.9242 1.9616 36 1 -1.4484 -5.2076 1.6057 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364956358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:13 Heat of formation + Delta-G solvation = -48.606167 kcal Electronic energy + Delta-G solvation = -17943.605982 eV Core-core repulsion = 15233.588481 eV Total energy + Delta-G solvation = -2710.017501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05768 -39.59128 -36.59049 -34.77332 -34.54475 -31.45666 -30.89555 -27.87639 -27.37330 -24.58115 -23.18955 -21.38589 -21.20322 -20.39888 -18.90673 -18.04862 -17.63130 -16.86707 -16.59833 -15.80307 -15.65219 -15.51518 -15.04525 -14.74923 -14.23818 -13.95020 -13.71849 -13.12291 -12.98390 -12.72840 -12.55196 -12.46374 -12.19082 -12.00687 -11.72709 -11.60094 -11.32450 -11.26734 -11.15469 -10.74421 -10.63165 -10.53641 -9.07124 -8.18281 -6.32191 1.36248 1.38188 1.52094 1.63808 2.38182 2.62364 3.04190 3.12419 3.22962 3.76521 3.92500 4.12339 4.14211 4.29486 4.41626 4.48150 4.64037 4.72636 4.80504 4.88725 4.93118 5.02448 5.12434 5.18380 5.24745 5.28627 5.44731 5.49039 5.55696 5.61345 5.90396 5.96149 6.13748 6.39731 6.54925 6.87364 7.37124 7.44166 8.91797 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.008203 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.027015 B = 3412.686693 C = 4148.328068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.509 5.509 11 C 0.063 3.937 12 C -0.101 4.101 13 H 0.108 0.892 14 C -0.109 4.109 15 C -0.110 4.110 16 C -0.095 4.095 17 C -0.117 4.117 18 H 0.031 0.969 19 C 0.064 3.936 20 H 0.128 0.872 21 C 0.497 3.503 22 N -0.834 5.834 23 O -0.581 6.581 24 H 0.261 0.739 25 H -0.012 1.012 26 H -0.013 1.013 27 H 0.077 0.923 28 H 0.013 0.987 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.418 0.582 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -17.349 -1.178 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.234 5.234 11 C -0.064 4.064 12 C -0.120 4.120 13 H 0.126 0.874 14 C -0.147 4.147 15 C -0.148 4.148 16 C -0.133 4.133 17 C -0.137 4.137 18 H 0.050 0.950 19 C -0.046 4.046 20 H 0.146 0.854 21 C 0.282 3.718 22 N -0.399 5.399 23 O -0.460 6.460 24 H 0.070 0.930 25 H 0.006 0.994 26 H 0.005 0.995 27 H 0.095 0.905 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.260 -16.671 -1.304 17.856 hybrid contribution -1.237 1.267 -0.140 1.776 sum 5.023 -15.405 -1.444 16.267 Atomic orbital electron populations 1.70212 1.08027 1.27504 1.51607 1.26058 0.95732 1.03600 0.94832 0.85278 0.79063 0.78162 0.77745 1.18196 1.20483 1.20168 1.21613 0.93611 0.91472 1.50262 0.91843 1.19680 0.89890 0.88615 0.93910 1.65662 1.27269 1.00609 1.29851 1.22327 0.98186 0.96829 0.89047 1.22576 0.96927 0.93216 0.99260 0.87355 1.21952 1.02116 0.96395 0.94245 1.22931 0.99558 0.95540 0.96757 1.21423 1.00658 0.91776 0.99439 1.21890 0.98477 0.99096 0.94242 0.95023 1.21863 0.88980 0.93985 0.99812 0.85430 1.21412 0.91079 0.78472 0.80812 1.43673 1.15363 1.50372 1.30522 1.90812 1.65228 1.37838 1.52111 0.92992 0.99413 0.99452 0.90501 0.96829 0.93316 0.89281 0.91102 0.88816 0.88830 0.91728 0.75061 0.76717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.55 13.29 21.45 0.28 -61.27 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 47.04 29.54 68.60 2.03 49.06 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.53 -32.65 8.71 25.60 0.22 -32.42 16 8 H 0.06 3.76 7.78 -2.91 -0.02 3.74 16 9 C 0.21 12.14 3.18 85.56 0.27 12.41 16 10 N -0.51 -23.37 5.30 -872.83 -4.62 -27.99 16 11 C 0.06 2.62 5.81 85.21 0.49 3.11 16 12 C -0.10 -2.94 3.14 -10.04 -0.03 -2.97 16 13 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 14 C -0.11 -2.53 6.60 31.28 0.21 -2.32 16 15 C -0.11 -1.96 6.96 32.83 0.23 -1.74 16 16 C -0.09 -1.97 6.73 30.62 0.21 -1.76 16 17 C -0.12 -3.63 2.02 -11.19 -0.02 -3.65 16 18 H 0.03 1.25 7.51 -2.39 -0.02 1.23 16 19 C 0.06 2.31 3.70 42.57 0.16 2.47 16 20 H 0.13 3.53 7.97 -2.39 -0.02 3.52 16 21 C 0.50 20.12 5.58 87.66 0.49 20.61 16 22 N -0.83 -23.38 8.87 -173.54 -1.54 -24.92 16 23 O -0.58 -31.20 14.18 -3.03 -0.04 -31.24 16 24 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 25 H -0.01 -0.80 6.07 -2.38 -0.01 -0.82 16 26 H -0.01 -0.81 6.86 -2.39 -0.02 -0.82 16 27 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.01 0.64 7.77 -2.39 -0.02 0.62 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.42 7.83 8.71 -92.70 -0.81 7.03 16 36 H 0.40 10.60 8.93 -92.70 -0.83 9.78 16 Total: -1.00 -82.92 285.42 -1.76 -84.68 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.55 Total: 17.76 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 2.69 Total: -6.08 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.88 Total: -114.18 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.04 Total: -31.24 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -82.92 -1.76 -84.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364956358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.072 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds