Wall clock time and date at job start Sun Mar 29 2020 22:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47025 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47537 * 120.00052 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 13 13 H 1.08993 * 110.71657 * 154.04625 * 12 11 10 14 14 N 1.46497 * 110.71634 * 277.13858 * 12 11 10 15 15 C 1.34783 * 119.99839 * 204.99830 * 14 12 11 16 16 O 1.21285 * 119.99855 * 0.02562 * 15 14 12 17 17 C 1.50699 * 120.00223 * 179.97438 * 15 14 12 18 18 C 1.53785 * 113.61656 * 277.50186 * 17 15 14 19 19 C 1.53779 * 87.07999 * 220.01957 * 18 17 15 20 20 C 1.53779 * 113.61441 * 180.02562 * 17 15 14 21 21 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 22 22 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 24 24 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 25 25 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 26 26 H 1.09006 * 111.00207 * 204.91491 * 11 10 9 27 27 H 0.96995 * 120.00597 * 25.00357 * 14 12 11 28 28 H 1.08997 * 112.84571 * 48.80864 * 17 15 14 29 29 H 1.09005 * 113.61204 * 334.56524 * 18 17 15 30 30 H 1.09000 * 113.61450 * 105.46887 * 18 17 15 31 31 H 1.09003 * 113.61043 * 270.88371 * 19 18 17 32 32 H 1.09000 * 113.61494 * 139.97777 * 19 18 17 33 33 H 1.08996 * 113.61612 * 254.53407 * 20 17 15 34 34 H 1.09000 * 113.61015 * 25.35486 * 20 17 15 35 35 H 1.09000 * 109.88493 * 59.55525 * 21 9 7 36 36 H 1.09005 * 110.00581 * 298.46835 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 6 0.7784 -4.7525 0.0253 13 1 1.0219 -5.5944 0.6732 14 7 0.4658 -5.2163 -1.3287 15 6 1.0731 -6.3138 -1.8220 16 8 1.8779 -6.9176 -1.1448 17 6 0.7511 -6.7914 -3.2146 18 6 -0.5256 -7.6450 -3.2934 19 6 0.2275 -8.5380 -4.2935 20 6 1.5259 -8.0540 -3.6274 21 6 1.9318 -3.7275 -0.0016 22 1 -0.4849 0.8401 -0.0004 23 1 -0.5272 -2.4863 -1.0190 24 1 -0.5992 -1.7590 0.6154 25 1 -0.3519 -3.8989 1.6990 26 1 -1.3590 -4.3329 0.2770 27 1 -0.1781 -4.7336 -1.8702 28 1 0.7905 -5.9929 -3.9555 29 1 -0.7726 -8.1484 -2.3586 30 1 -1.3754 -7.1204 -3.7303 31 1 0.1225 -8.2175 -5.3300 32 1 0.0377 -9.6027 -4.1572 33 1 2.3328 -7.8597 -4.3339 34 1 1.8406 -8.6683 -2.7838 35 1 2.5585 -3.8515 0.8815 36 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369066234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:16 Heat of formation + Delta-G solvation = -15.907926 kcal Electronic energy + Delta-G solvation = -17195.501293 eV Core-core repulsion = 14486.901694 eV Total energy + Delta-G solvation = -2708.599599 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33397 -39.41749 -38.00588 -35.47147 -33.59720 -31.05455 -29.26923 -27.49129 -26.50821 -26.24923 -22.49174 -22.05239 -21.29676 -20.25014 -19.00743 -18.36317 -17.38518 -16.71093 -16.49008 -15.77299 -15.67593 -15.52445 -14.76953 -14.38677 -13.85890 -13.74019 -13.42145 -13.36139 -13.05804 -12.89422 -12.76893 -12.37521 -12.14623 -12.10371 -12.05237 -11.84273 -11.46677 -11.40574 -11.25669 -10.75886 -10.65202 -10.06207 -8.91021 -7.79273 -5.23342 1.46450 1.49038 1.55671 1.63800 2.26879 2.48836 3.30743 3.56740 3.66523 3.68966 3.79993 3.86475 3.94752 4.06279 4.26428 4.30757 4.62740 4.71295 4.73341 4.82582 4.88479 4.90497 5.00971 5.03198 5.06257 5.11765 5.22234 5.42540 5.52472 5.59599 5.63533 5.79260 6.30195 6.61452 7.10171 7.28231 7.75702 8.39222 9.22056 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041965 B = 0.005237 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.061541 B = 5345.162189 C = 5426.528799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.622 5.622 10 C 0.155 3.845 11 C -0.133 4.133 12 C 0.142 3.858 13 H 0.094 0.906 14 N -0.705 5.705 15 C 0.517 3.483 16 O -0.588 6.588 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.125 4.125 21 C 0.126 3.874 22 H 0.249 0.751 23 H -0.002 1.002 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.409 0.591 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -14.045 -7.345 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.030 3.970 11 C -0.172 4.172 12 C 0.037 3.963 13 H 0.112 0.888 14 N -0.355 5.355 15 C 0.306 3.694 16 O -0.469 6.469 17 C -0.163 4.163 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.163 4.163 21 C -0.001 4.001 22 H 0.059 0.941 23 H 0.016 0.984 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.245 0.755 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.399 -14.250 -6.855 16.174 hybrid contribution 0.488 1.455 -0.037 1.535 sum -2.911 -12.795 -6.892 14.821 Atomic orbital electron populations 1.70007 1.05948 1.25231 1.58156 1.25554 0.96684 1.00641 1.02319 0.85146 0.77210 0.78861 0.78040 1.20710 1.21451 1.20493 1.19367 0.90845 0.83960 1.43343 0.90957 1.44760 1.02942 1.00281 1.86828 1.21770 0.83588 0.94589 0.97040 1.23177 0.97430 0.95676 1.00869 1.21716 0.95147 0.95336 0.84143 0.88819 1.45982 1.44840 1.28343 1.16321 1.21228 0.79311 0.79174 0.89698 1.90635 1.36142 1.58035 1.62061 1.22966 1.01437 0.99451 0.92452 1.22820 0.95245 0.96980 1.00422 1.22800 0.94156 1.00294 0.99177 1.22810 0.97963 0.95038 1.00480 1.21767 0.95214 0.85768 0.97340 0.94121 0.98365 0.90613 0.90196 0.88381 0.75485 0.85487 0.90553 0.88732 0.88076 0.90154 0.90646 0.90841 0.95764 0.97196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.04 10.09 21.65 0.22 -54.82 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16 3 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.09 10.27 84.03 0.86 -13.23 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.62 -32.45 3.39 -691.99 -2.35 -34.80 16 10 C 0.15 7.30 5.84 86.86 0.51 7.81 16 11 C -0.13 -4.68 6.67 31.99 0.21 -4.47 16 12 C 0.14 5.14 3.33 46.18 0.15 5.30 16 13 H 0.09 3.35 7.55 -2.39 -0.02 3.33 16 14 N -0.70 -21.95 5.09 -436.93 -2.22 -24.17 16 15 C 0.52 16.05 7.36 87.66 0.64 16.70 16 16 O -0.59 -22.81 15.54 -3.05 -0.05 -22.85 16 17 C -0.14 -3.10 4.15 -11.01 -0.05 -3.15 16 18 C -0.12 -1.93 7.63 31.12 0.24 -1.69 16 19 C -0.13 -1.81 8.08 31.11 0.25 -1.56 16 20 C -0.12 -2.56 7.40 31.11 0.23 -2.33 16 21 C 0.13 5.65 6.98 86.73 0.61 6.25 16 22 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 23 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.08 4.10 5.88 -2.38 -0.01 4.09 16 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 27 H 0.41 11.35 8.64 -92.71 -0.80 10.55 16 28 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.08 1.40 8.09 -2.38 -0.02 1.39 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.82 7.43 -2.39 -0.02 1.81 16 35 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.01 0.48 8.04 -2.38 -0.02 0.46 16 Total: -1.00 -68.26 293.24 2.02 -66.24 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.26 Total: 15.97 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.13 Total: 6.76 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.35 Total: -113.79 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.26 2.02 -66.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369066234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.335 kcal (2) G-P(sol) polarization free energy of solvation -68.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds