Wall clock time and date at job start Sun Mar 29 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 13 13 N 1.46499 * 109.47012 * 300.00256 * 12 2 1 14 14 C 1.39140 * 119.99798 * 180.02562 * 13 12 2 15 15 C 1.39106 * 119.68248 * 359.97438 * 14 13 12 16 16 C 1.38309 * 119.12486 * 179.97438 * 15 14 13 17 17 C 1.39047 * 118.48597 * 0.02562 * 16 15 14 18 18 F 1.35096 * 120.35924 * 179.97438 * 17 16 15 19 19 C 1.38219 * 119.27721 * 359.97438 * 17 16 15 20 20 N 1.31992 * 120.82666 * 359.74441 * 19 17 16 21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47375 * 59.99966 * 12 2 1 29 29 H 1.09002 * 109.46777 * 180.02562 * 12 2 1 30 30 H 0.97000 * 120.00420 * 359.97438 * 13 12 2 31 31 H 1.07998 * 120.43481 * 359.95830 * 15 14 13 32 32 H 1.08002 * 120.75654 * 180.02562 * 16 15 14 33 33 H 1.08005 * 119.58177 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1124 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8883 -0.5059 3.7091 15 6 2.6884 -1.6375 3.8289 16 6 3.0164 -2.0995 5.0907 17 6 2.5299 -1.4107 6.1963 18 9 2.8264 -1.8291 7.4461 19 6 1.7397 -0.2934 6.0026 20 7 1.4485 0.1264 4.7855 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 0.7094 1.1619 -3.4844 28 1 1.6767 -1.7490 1.2492 29 1 3.1301 -0.7209 1.2493 30 1 0.9943 0.7581 2.3565 31 1 3.0486 -2.1486 2.9484 32 1 3.6362 -2.9752 5.2143 33 1 1.3595 0.2456 6.8579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413417670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:35 Heat of formation + Delta-G solvation = -14.510766 kcal Electronic energy + Delta-G solvation = -16558.340685 eV Core-core repulsion = 13726.341366 eV Total energy + Delta-G solvation = -2831.999319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.62265 -39.91838 -37.01882 -33.99468 -32.27848 -31.25674 -28.61889 -25.76541 -25.75005 -24.85299 -23.59629 -22.04457 -18.85510 -17.81506 -17.24610 -16.67382 -15.85520 -15.53759 -14.96641 -14.27573 -14.25238 -14.19867 -13.29849 -13.24277 -12.94944 -12.85493 -12.35428 -12.09121 -11.52290 -11.24741 -10.97705 -10.74924 -10.49742 -10.24485 -9.86642 -9.77534 -9.49827 -9.44651 -9.34033 -8.86176 -8.44932 -7.27878 -6.08197 -4.19673 1.28450 1.42207 3.23320 3.31014 3.32664 3.56204 3.94081 4.33804 4.40895 4.74003 4.87050 5.15856 5.18559 5.42742 5.80297 5.91514 6.05338 6.11384 6.15878 6.38321 6.63654 6.74715 6.81170 6.91383 6.95269 7.19682 7.37381 7.50181 7.62490 7.94511 7.94888 8.06983 8.28476 8.38610 8.80443 9.46673 10.93092 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.052401 B = 0.004998 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.210966 B = 5600.827357 C = 5943.979948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 C -0.132 4.132 4 C -0.510 4.510 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.703 5.703 14 C 0.403 3.597 15 C -0.216 4.216 16 C -0.063 4.063 17 C -0.043 4.043 18 F -0.145 7.145 19 C 0.130 3.870 20 N -0.532 5.532 21 H 0.086 0.914 22 H 0.026 0.974 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.026 0.974 26 H 0.086 0.914 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.406 0.594 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -3.022 11.211 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.058 3.942 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.332 5.332 14 C 0.164 3.836 15 C -0.242 4.242 16 C -0.089 4.089 17 C -0.068 4.068 18 F -0.125 7.125 19 C -0.030 4.030 20 N -0.249 5.249 21 H 0.104 0.896 22 H 0.045 0.955 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.243 0.757 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.616 -2.278 10.742 11.099 hybrid contribution 0.699 -1.012 -0.557 1.350 sum 2.315 -3.290 10.185 10.950 Atomic orbital electron populations 1.21833 0.97598 0.99203 1.00312 1.18327 0.92953 0.92852 0.90104 1.21829 0.98519 0.98278 1.00312 1.20933 1.31836 1.12188 0.89849 0.92460 1.24884 0.94797 0.94871 0.98900 1.69808 1.36406 1.22572 1.23351 0.86566 0.79248 0.79396 0.82609 1.20687 1.21222 1.19921 1.21881 0.97739 0.95767 0.83554 1.45199 1.54332 1.32291 1.01375 1.18644 0.89326 0.89029 0.86567 1.21385 1.05016 0.99639 0.98124 1.21313 0.97519 0.98919 0.91139 1.18346 1.07867 1.00651 0.79986 1.91435 1.92560 1.90062 1.38411 1.22406 0.93586 0.92407 0.94607 1.67278 1.27146 1.32980 0.97541 0.89580 0.95453 0.97256 0.97257 0.95449 0.89577 0.92899 0.92815 0.92820 0.75659 0.84024 0.84272 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -12.69 8.01 -34.44 -0.28 -12.96 16 5 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.10 9.35 55.43 0.52 -22.58 16 8 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.13 2.53 3.72 -4.04 -0.02 2.52 16 13 N -0.70 -12.36 5.14 -60.40 -0.31 -12.67 16 14 C 0.40 6.69 7.65 -154.92 -1.19 5.50 16 15 C -0.22 -3.16 9.33 -39.23 -0.37 -3.53 16 16 C -0.06 -0.82 10.15 -39.26 -0.40 -1.22 16 17 C -0.04 -0.59 7.34 -39.29 -0.29 -0.88 16 18 F -0.15 -1.94 17.28 2.25 0.04 -1.90 16 19 C 0.13 1.80 11.16 -17.49 -0.20 1.60 16 20 N -0.53 -8.64 10.39 -12.36 -0.13 -8.77 16 21 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 24 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 29 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 30 H 0.41 7.30 6.29 -40.82 -0.26 7.05 16 31 H 0.14 1.95 6.71 -52.49 -0.35 1.60 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 275.35 15.07 4.15 4.15 Total: -1.00 -25.72 275.35 -7.05 -32.77 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.01 Total: 5.38 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.29 Total: -11.39 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.08 Total: -44.02 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.72 -7.05 -32.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413417670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.264 kcal (2) G-P(sol) polarization free energy of solvation -25.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds