Wall clock time and date at job start Sun Mar 29 2020 22:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.08992 * 115.54997 * 9.41618 * 14 13 11 16 16 C 1.53002 * 117.49678 * 223.74599 * 14 13 11 17 17 C 1.53001 * 117.49582 * 155.08843 * 14 13 11 18 18 H 1.08996 * 117.50493 * 359.97313 * 17 14 13 19 19 C 1.53008 * 117.49419 * 214.97638 * 17 14 13 20 20 C 1.53773 * 113.61047 * 159.13886 * 19 17 14 21 21 C 1.53961 * 87.01646 * 220.04822 * 20 19 17 22 22 C 1.53773 * 113.61229 * 61.52996 * 19 17 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 27 27 H 0.97005 * 120.00332 * 0.02562 * 13 11 10 28 28 H 1.09007 * 117.49942 * 359.97438 * 16 14 13 29 29 H 1.09001 * 117.50004 * 145.01930 * 16 14 13 30 30 H 1.09000 * 112.84949 * 290.33611 * 19 17 14 31 31 H 1.09000 * 113.61866 * 334.56292 * 20 19 17 32 32 H 1.09003 * 113.61354 * 105.47490 * 20 19 17 33 33 H 1.09002 * 113.53425 * 270.80864 * 21 20 19 34 34 H 1.08998 * 113.66689 * 139.93640 * 21 20 19 35 35 H 1.09005 * 113.61387 * 254.52537 * 22 19 17 36 36 H 1.08995 * 113.61848 * 25.34954 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5585 -5.1055 0.0011 13 7 2.6297 -5.9077 0.0016 14 6 2.1414 -7.2890 0.0016 15 1 1.0701 -7.4088 -0.1597 16 6 2.8299 -8.2816 0.9405 17 6 3.0667 -8.3653 -0.5695 18 1 4.0385 -8.0458 -0.9457 19 6 2.4172 -9.5280 -1.3229 20 6 3.3798 -10.2614 -2.2717 21 6 2.2098 -10.3383 -3.2695 22 6 1.6371 -9.0919 -2.5743 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 3.1568 -3.4353 0.0009 27 1 3.5834 -5.7304 0.0020 28 1 3.6465 -7.9071 1.5578 29 1 2.2116 -9.0548 1.3965 30 1 1.8558 -10.1952 -0.6689 31 1 4.2082 -9.6429 -2.6172 32 1 3.7025 -11.2340 -1.9001 33 1 1.5923 -11.2283 -3.1483 34 1 2.5050 -10.1644 -4.3042 35 1 0.5550 -9.1216 -2.4466 36 1 1.9872 -8.1524 -3.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425735921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:54 Heat of formation + Delta-G solvation = -2.842484 kcal Electronic energy + Delta-G solvation = -16376.633955 eV Core-core repulsion = 13668.600916 eV Total energy + Delta-G solvation = -2708.033039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83152 -38.87507 -36.44574 -34.33552 -32.79074 -31.84019 -26.77134 -26.00157 -25.73245 -23.00610 -21.74332 -21.05311 -20.34634 -19.51673 -18.18870 -16.77530 -16.23484 -15.66372 -15.03956 -14.70772 -14.35498 -13.79088 -13.48717 -13.12712 -12.63817 -12.59747 -12.49629 -12.29397 -12.13781 -11.94587 -11.11426 -10.99719 -10.89481 -10.77722 -10.73408 -10.39574 -10.15126 -9.84790 -9.56587 -8.77985 -8.70254 -8.48941 -7.87091 -6.50042 -4.23171 3.16897 3.38792 3.40504 3.54849 3.59668 4.01293 4.39462 4.45412 4.53973 4.57321 4.73151 4.94392 4.95984 4.99319 5.11189 5.28016 5.29092 5.53288 5.61414 5.63434 5.69910 5.73870 5.88159 5.99443 6.02181 6.13194 6.36238 6.82204 6.91400 7.27470 7.34606 7.47355 7.87078 8.30058 8.63988 8.81626 9.25042 9.51238 10.90314 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.003902 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.609009 B = 7173.660111 C = 7253.103423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.623 4.623 8 H 0.056 0.944 9 C 0.257 3.743 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.600 6.600 13 N -0.727 5.727 14 C 0.118 3.882 15 H 0.135 0.865 16 C -0.196 4.196 17 C -0.155 4.155 18 H 0.104 0.896 19 C -0.078 4.078 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.135 4.135 23 H 0.273 0.727 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.389 0.611 27 H 0.393 0.607 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -18.806 -2.697 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.904 3.096 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.661 4.661 8 H 0.075 0.925 9 C 0.135 3.865 10 N -0.376 5.376 11 C 0.396 3.604 12 O -0.479 6.479 13 N -0.380 5.380 14 C 0.011 3.989 15 H 0.153 0.847 16 C -0.235 4.235 17 C -0.175 4.175 18 H 0.122 0.878 19 C -0.097 4.097 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.172 4.172 23 H 0.084 0.916 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.221 0.779 27 H 0.226 0.774 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.522 -17.264 -2.701 19.024 hybrid contribution 1.242 -1.578 0.077 2.009 sum 8.763 -18.842 -2.624 20.945 Atomic orbital electron populations 1.70754 1.06862 1.31097 1.44954 1.25877 0.96434 1.02691 0.93350 0.83439 0.74788 0.74864 0.76533 1.20554 1.21312 1.21315 1.22065 0.94554 0.91503 1.57985 0.92540 1.19050 0.88487 0.82556 0.96361 1.45512 1.10737 1.04079 1.77236 1.16105 0.85192 0.80977 0.78108 1.90858 1.14235 1.84181 1.58674 1.44549 1.08578 1.04029 1.80872 1.21358 0.97902 0.77778 1.01899 0.84702 1.23622 1.04079 1.03203 0.92583 1.22856 1.00590 0.98786 0.95234 0.87766 1.22110 0.97242 0.95385 0.94928 1.22975 0.96851 1.00365 0.96841 1.22857 0.98090 0.98613 0.98688 1.22919 0.99994 0.98129 0.96165 0.91648 0.96694 0.96699 0.77886 0.77414 0.88786 0.88294 0.89136 0.90154 0.91682 0.90382 0.91576 0.91448 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.65 55.43 0.76 -26.85 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.57 29.90 -169.99 -5.08 19.48 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.62 -17.37 9.28 -34.44 -0.32 -17.69 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 9 C 0.26 6.97 4.74 -5.19 -0.02 6.95 16 10 N -0.72 -15.91 5.55 -66.41 -0.37 -16.27 16 11 C 0.70 14.73 8.57 -86.92 -0.74 13.98 16 12 O -0.60 -15.20 15.91 5.29 0.08 -15.12 16 13 N -0.73 -11.25 5.57 -58.67 -0.33 -11.57 16 14 C 0.12 1.61 5.98 -67.93 -0.41 1.21 16 15 H 0.14 2.13 7.40 -51.93 -0.38 1.75 16 16 C -0.20 -2.08 10.15 -26.69 -0.27 -2.35 16 17 C -0.15 -1.59 5.46 -90.58 -0.49 -2.09 16 18 H 0.10 1.01 7.97 -51.93 -0.41 0.60 16 19 C -0.08 -0.73 3.87 -89.81 -0.35 -1.07 16 20 C -0.13 -1.08 7.65 -25.83 -0.20 -1.28 16 21 C -0.15 -1.20 8.09 -25.83 -0.21 -1.41 16 22 C -0.13 -1.36 7.49 -25.93 -0.19 -1.55 16 23 H 0.27 8.48 7.22 -40.82 -0.29 8.18 16 24 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 25 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 26 H 0.39 7.36 8.34 -40.82 -0.34 7.02 16 27 H 0.39 4.89 8.84 -40.82 -0.36 4.53 16 28 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.08 0.65 7.98 -51.93 -0.41 0.23 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -32.89 305.00 -9.26 -42.15 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.61 Total: 8.36 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.31 Total: -4.78 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.06 Total: -54.70 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.89 -9.26 -42.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425735921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.306 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds