Wall clock time and date at job start Sun Mar 29 2020 22:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.08992 * 115.54997 * 9.41618 * 14 13 11 16 16 C 1.53002 * 117.49678 * 223.74599 * 14 13 11 17 17 C 1.53001 * 117.49582 * 155.08843 * 14 13 11 18 18 H 1.08996 * 117.50493 * 359.97313 * 17 14 13 19 19 C 1.53008 * 117.49419 * 214.97638 * 17 14 13 20 20 C 1.53773 * 113.61047 * 159.13886 * 19 17 14 21 21 C 1.53961 * 87.01646 * 220.04822 * 20 19 17 22 22 C 1.53773 * 113.61229 * 61.52996 * 19 17 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 27 27 H 0.97005 * 120.00332 * 0.02562 * 13 11 10 28 28 H 1.09007 * 117.49942 * 359.97438 * 16 14 13 29 29 H 1.09001 * 117.50004 * 145.01930 * 16 14 13 30 30 H 1.09000 * 112.84949 * 290.33611 * 19 17 14 31 31 H 1.09000 * 113.61866 * 334.56292 * 20 19 17 32 32 H 1.09003 * 113.61354 * 105.47490 * 20 19 17 33 33 H 1.09002 * 113.53425 * 270.80864 * 21 20 19 34 34 H 1.08998 * 113.66689 * 139.93640 * 21 20 19 35 35 H 1.09005 * 113.61387 * 254.52537 * 22 19 17 36 36 H 1.08995 * 113.61848 * 25.34954 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5585 -5.1055 0.0011 13 7 2.6297 -5.9077 0.0016 14 6 2.1414 -7.2890 0.0016 15 1 1.0701 -7.4088 -0.1597 16 6 2.8299 -8.2816 0.9405 17 6 3.0667 -8.3653 -0.5695 18 1 4.0385 -8.0458 -0.9457 19 6 2.4172 -9.5280 -1.3229 20 6 3.3798 -10.2614 -2.2717 21 6 2.2098 -10.3383 -3.2695 22 6 1.6371 -9.0919 -2.5743 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 3.1568 -3.4353 0.0009 27 1 3.5834 -5.7304 0.0020 28 1 3.6465 -7.9071 1.5578 29 1 2.2116 -9.0548 1.3965 30 1 1.8558 -10.1952 -0.6689 31 1 4.2082 -9.6429 -2.6172 32 1 3.7025 -11.2340 -1.9001 33 1 1.5923 -11.2283 -3.1483 34 1 2.5050 -10.1644 -4.3042 35 1 0.5550 -9.1216 -2.4466 36 1 1.9872 -8.1524 -3.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425735921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:54 Heat of formation + Delta-G solvation = -25.587671 kcal Electronic energy + Delta-G solvation = -16377.620260 eV Core-core repulsion = 13668.600916 eV Total energy + Delta-G solvation = -2709.019344 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17249 -40.03646 -37.54646 -36.36182 -34.65303 -33.43957 -28.74167 -26.92341 -26.45455 -25.01433 -23.05064 -21.95517 -21.91046 -20.40297 -19.88947 -18.63455 -17.61340 -16.50470 -16.44034 -16.21853 -15.76589 -15.61766 -15.05140 -14.43147 -14.36745 -14.23939 -13.41711 -13.34051 -13.29606 -13.10408 -12.90846 -12.53810 -12.12894 -11.90569 -11.78000 -11.48725 -11.40474 -11.19595 -10.93707 -10.76829 -10.68020 -10.15076 -9.48623 -8.80115 -6.55403 1.55966 1.65462 1.70101 1.84816 2.03796 2.56151 2.88076 3.08466 3.31351 3.62729 3.75294 3.81147 3.95145 4.09480 4.15592 4.24343 4.47640 4.65480 4.81670 4.87373 4.88991 4.90460 4.96557 4.97925 5.09157 5.12353 5.23032 5.38579 5.43173 5.47833 5.57723 5.64021 6.03497 6.13426 6.35563 7.13174 7.30808 7.58934 8.59474 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.003902 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.609009 B = 7173.660111 C = 7253.103423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.033 4.033 3 Si 1.132 2.868 4 H -0.286 1.286 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.630 4.630 8 H 0.077 0.923 9 C 0.272 3.728 10 N -0.719 5.719 11 C 0.694 3.306 12 O -0.648 6.648 13 N -0.701 5.701 14 C 0.075 3.925 15 H 0.105 0.895 16 C -0.174 4.174 17 C -0.128 4.128 18 H 0.119 0.881 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.146 4.146 23 H 0.254 0.746 24 H -0.018 1.018 25 H -0.019 1.019 26 H 0.406 0.594 27 H 0.411 0.589 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.954 -19.796 -2.600 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.231 4.231 3 Si 0.951 3.049 4 H -0.212 1.212 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.667 4.667 8 H 0.095 0.905 9 C 0.148 3.852 10 N -0.372 5.372 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.356 5.356 14 C -0.031 4.031 15 H 0.123 0.877 16 C -0.212 4.212 17 C -0.148 4.148 18 H 0.137 0.863 19 C -0.099 4.099 20 C -0.161 4.161 21 C -0.177 4.177 22 C -0.184 4.184 23 H 0.063 0.937 24 H -0.001 1.001 25 H -0.001 1.001 26 H 0.242 0.758 27 H 0.248 0.752 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.672 -18.339 -2.604 21.377 hybrid contribution 0.259 -1.400 0.036 1.425 sum 10.931 -19.739 -2.568 22.709 Atomic orbital electron populations 1.70900 1.08293 1.29947 1.47391 1.27691 0.96342 1.07169 0.91912 0.82769 0.73892 0.69866 0.78395 1.21167 1.18787 1.18811 1.22420 0.95614 0.91599 1.57090 0.90516 1.18550 0.88795 0.84580 0.93264 1.45114 1.10786 1.03519 1.77807 1.16263 0.85150 0.81502 0.77731 1.90824 1.16733 1.84879 1.60684 1.44255 1.08684 1.03556 1.79081 1.21462 0.97468 0.77347 1.06827 0.87664 1.23710 1.03432 1.01199 0.92904 1.22928 0.99779 0.96714 0.95344 0.86331 1.22205 0.97679 0.95282 0.94779 1.22942 0.96440 1.00913 0.95809 1.22863 0.98164 0.97780 0.98909 1.22937 0.99497 0.98472 0.97484 0.93701 1.00059 1.00097 0.75844 0.75207 0.87416 0.87065 0.88339 0.89802 0.90138 0.89376 0.91245 0.92608 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.65 21.45 0.29 -58.17 16 2 C -0.03 -1.87 5.46 84.65 0.46 -1.40 16 3 Si 1.13 48.23 29.90 68.60 2.05 50.28 16 4 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.63 -35.18 9.28 25.60 0.24 -34.94 16 8 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 9 C 0.27 15.32 4.74 85.64 0.41 15.72 16 10 N -0.72 -31.97 5.55 -482.29 -2.68 -34.65 16 11 C 0.69 29.98 8.57 179.05 1.53 31.51 16 12 O -0.65 -34.50 15.91 -3.99 -0.06 -34.56 16 13 N -0.70 -21.23 5.57 -457.81 -2.55 -23.78 16 14 C 0.08 2.01 5.98 44.99 0.27 2.28 16 15 H 0.11 3.48 7.40 -2.39 -0.02 3.46 16 16 C -0.17 -3.23 10.15 30.62 0.31 -2.92 16 17 C -0.13 -2.34 5.46 -10.77 -0.06 -2.40 16 18 H 0.12 1.89 7.97 -2.39 -0.02 1.87 16 19 C -0.08 -1.35 3.87 -10.27 -0.04 -1.39 16 20 C -0.12 -1.65 7.65 31.18 0.24 -1.41 16 21 C -0.14 -2.06 8.09 31.18 0.25 -1.81 16 22 C -0.15 -2.89 7.49 31.12 0.23 -2.65 16 23 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 24 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 25 H -0.02 -1.17 8.01 -2.38 -0.02 -1.19 16 26 H 0.41 14.96 8.34 -92.71 -0.77 14.19 16 27 H 0.41 9.38 8.84 -92.70 -0.82 8.56 16 28 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.11 1.84 8.13 -2.39 -0.02 1.82 16 30 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.08 1.08 7.98 -2.39 -0.02 1.06 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -74.15 305.00 0.48 -73.67 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.41 Total: 26.62 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 3.84 Total: 0.59 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -4.94 Total: -116.60 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.06 Total: -34.56 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -74.15 0.48 -73.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425735921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.078 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds